Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 EEF1DP2-201ENST00000433698 843 ntBASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AL133466.1-201ENST00000447582 150 ntBASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 KRT8P1-201ENST00000557533 1207 ntBASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 RCC2P1-201ENST00000452257 1476 ntBASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AC073150.1-201ENST00000450406 1084 ntBASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AL133499.1-201ENST00000596207 608 ntBASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 AL353637.1-201ENST00000451571 732 ntBASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 AC093752.3-201ENST00000567343 901 ntBASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 AF254983.2-201ENST00000612331 135 ntBASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 CU633904.3-201ENST00000624042 1029 ntBASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHROOM3Q8TF72 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 AL596276.2-201ENST00000447525 331 ntBASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 RN7SL455P-201ENST00000580629 282 ntBASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms