Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.81□□□□□ -0.2
COL28A1Q2UY09 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 AC087386.2-201ENST00000623212 4637 ntBASIC13.81□□□□□ -0.2
COL28A1Q2UY09 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL28A1Q2UY09 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AC117489.1-201ENST00000625169 3217 ntBASIC13.8□□□□□ -0.2
COL28A1Q2UY09 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 FTH1P22-201ENST00000456305 520 ntBASIC13.8□□□□□ -0.2
COL28A1Q2UY09 RPS23-204ENST00000507980 836 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 ABHD17AP9-201ENST00000561925 548 ntBASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 MT3-203ENST00000565838 421 ntTSL 3 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AC012073.1-201ENST00000606114 1108 ntBASIC13.8□□□□□ -0.2
COL28A1Q2UY09 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AC067750.1-201ENST00000608826 6545 ntBASIC13.8□□□□□ -0.2
COL28A1Q2UY09 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL28A1Q2UY09 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 AC009093.2-202ENST00000620513 2079 ntBASIC13.79□□□□□ -0.2
COL28A1Q2UY09 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms