Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 CD37-203ENST00000426897 1204 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC17.25■□□□□ 0.35
NUP98P52948 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 KRT8P34-201ENST00000577607 1044 ntBASIC17.25■□□□□ 0.35
NUP98P52948 AL627230.2-201ENST00000613254 655 ntBASIC17.25■□□□□ 0.35
NUP98P52948 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.25■□□□□ 0.35
NUP98P52948 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 AC245140.2-201ENST00000624054 1939 ntBASIC17.25■□□□□ 0.35
NUP98P52948 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP98P52948 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC17.24■□□□□ 0.35
NUP98P52948 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC17.24■□□□□ 0.35
NUP98P52948 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 AC090510.3-201ENST00000615831 821 ntBASIC17.24■□□□□ 0.35
NUP98P52948 MME-218ENST00000625667 363 ntTSL 5 BASIC17.24■□□□□ 0.35
NUP98P52948 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NUP98P52948 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
NUP98P52948 AC005912.2-201ENST00000619492 2400 ntBASIC17.24■□□□□ 0.35
NUP98P52948 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP98P52948 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
NUP98P52948 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
NUP98P52948 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP98P52948 MIR5091-201ENST00000578707 93 ntBASIC17.24■□□□□ 0.35
NUP98P52948 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
NUP98P52948 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP98P52948 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC17.23■□□□□ 0.35
NUP98P52948 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
NUP98P52948 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.23■□□□□ 0.35
NUP98P52948 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 INTS4P1-203ENST00000641008 3683 ntBASIC17.23■□□□□ 0.35
NUP98P52948 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC17.23■□□□□ 0.35
NUP98P52948 KRT18P33-201ENST00000398525 1043 ntBASIC17.23■□□□□ 0.35
NUP98P52948 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 RPL18AP16-201ENST00000424057 531 ntBASIC17.23■□□□□ 0.35
NUP98P52948 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC17.23■□□□□ 0.35
NUP98P52948 HNRNPA3P6-201ENST00000472163 1006 ntBASIC17.23■□□□□ 0.35
NUP98P52948 AC079414.2-201ENST00000567157 1104 ntBASIC17.23■□□□□ 0.35
NUP98P52948 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
NUP98P52948 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC17.23■□□□□ 0.35
NUP98P52948 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
NUP98P52948 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUP98P52948 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
NUP98P52948 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.23■□□□□ 0.35
NUP98P52948 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
NUP98P52948 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC17.23■□□□□ 0.35
NUP98P52948 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC17.23■□□□□ 0.35
NUP98P52948 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC17.22■□□□□ 0.35
NUP98P52948 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
NUP98P52948 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
NUP98P52948 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
NUP98P52948 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.22■□□□□ 0.35
NUP98P52948 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC17.22■□□□□ 0.35
NUP98P52948 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC17.22■□□□□ 0.35
NUP98P52948 AC120498.7-201ENST00000562876 330 ntBASIC17.22■□□□□ 0.35
NUP98P52948 NAA38-204ENST00000575208 529 ntTSL 3 BASIC17.22■□□□□ 0.35
NUP98P52948 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms