Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 MIR600HG-201ENST00000449175 5984 ntBASIC16.26■□□□□ 0.19
SMARCA1P28370 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
SMARCA1P28370 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.26■□□□□ 0.19
SMARCA1P28370 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC16.26■□□□□ 0.19
SMARCA1P28370 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SMARCA1P28370 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
SMARCA1P28370 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC16.26■□□□□ 0.19
SMARCA1P28370 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
SMARCA1P28370 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 AL928654.5-201ENST00000624831 2501 ntBASIC16.25■□□□□ 0.19
SMARCA1P28370 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 HLA-DMA-203ENST00000395305 777 ntBASIC16.25■□□□□ 0.19
SMARCA1P28370 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SMARCA1P28370 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.25■□□□□ 0.19
SMARCA1P28370 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.25■□□□□ 0.19
SMARCA1P28370 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 MRPL22P1-201ENST00000505398 616 ntBASIC16.25■□□□□ 0.19
SMARCA1P28370 AC095040.1-201ENST00000513286 675 ntBASIC16.25■□□□□ 0.19
SMARCA1P28370 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC16.25■□□□□ 0.19
SMARCA1P28370 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SMARCA1P28370 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 MIR2392-201ENST00000584881 84 ntBASIC16.25■□□□□ 0.19
SMARCA1P28370 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.25■□□□□ 0.19
SMARCA1P28370 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.25■□□□□ 0.19
SMARCA1P28370 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SMARCA1P28370 AC138761.6-201ENST00000583997 1423 ntBASIC16.25■□□□□ 0.19
SMARCA1P28370 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SMARCA1P28370 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SMARCA1P28370 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SMARCA1P28370 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC16.24■□□□□ 0.19
SMARCA1P28370 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.24■□□□□ 0.19
SMARCA1P28370 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.24■□□□□ 0.19
SMARCA1P28370 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.24■□□□□ 0.19
SMARCA1P28370 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC16.24■□□□□ 0.19
SMARCA1P28370 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 CD81-209ENST00000492627 886 ntTSL 3 BASIC16.24■□□□□ 0.19
SMARCA1P28370 COQ10BP2-201ENST00000513804 724 ntBASIC16.24■□□□□ 0.19
SMARCA1P28370 AC138701.2-201ENST00000553634 226 ntBASIC16.24■□□□□ 0.19
SMARCA1P28370 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 MIR4265-201ENST00000582152 99 ntBASIC16.24■□□□□ 0.19
SMARCA1P28370 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 AC016629.1-201ENST00000596579 586 ntBASIC16.24■□□□□ 0.19
SMARCA1P28370 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.24■□□□□ 0.19
SMARCA1P28370 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
SMARCA1P28370 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.24■□□□□ 0.19
SMARCA1P28370 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms