Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC17.26■□□□□ 0.35
COL5A3P25940 INO80E-209ENST00000567254 625 ntTSL 2 BASIC17.26■□□□□ 0.35
COL5A3P25940 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC17.26■□□□□ 0.35
COL5A3P25940 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL5A3P25940 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL5A3P25940 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A3P25940 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC17.25■□□□□ 0.35
COL5A3P25940 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC17.25■□□□□ 0.35
COL5A3P25940 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A3P25940 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A3P25940 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
COL5A3P25940 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC17.25■□□□□ 0.35
COL5A3P25940 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COL5A3P25940 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 PSME2-217ENST00000615264 874 ntTSL 5 BASIC17.25■□□□□ 0.35
COL5A3P25940 PSME2-218ENST00000630027 185 ntTSL 3 BASIC17.25■□□□□ 0.35
COL5A3P25940 Z82244.1-201ENST00000631502 840 ntBASIC17.25■□□□□ 0.35
COL5A3P25940 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COL5A3P25940 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC17.25■□□□□ 0.35
COL5A3P25940 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A3P25940 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COL5A3P25940 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COL5A3P25940 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 SFPQP1-201ENST00000446621 1786 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 KRT8P6-201ENST00000399259 1207 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 TUBB2BP1-201ENST00000404155 871 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 DDX11L8-201ENST00000535849 366 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A3P25940 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A3P25940 CLPP-205ENST00000596605 646 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 MIR6893-201ENST00000613458 69 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A3P25940 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL5A3P25940 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
COL5A3P25940 TCAM1P-207ENST00000485295 1537 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC17.24■□□□□ 0.35
COL5A3P25940 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COL5A3P25940 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.24■□□□□ 0.35
COL5A3P25940 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 AL121753.2-201ENST00000624581 1461 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 CCL25-202ENST00000315626 450 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 RNA5SP84-201ENST00000364740 107 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 SERF2-204ENST00000402131 586 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 OR4C14P-201ENST00000440929 923 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A3P25940 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC17.24■□□□□ 0.35
COL5A3P25940 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A3P25940 PIGCP1-201ENST00000527583 895 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 AP001102.1-201ENST00000528959 409 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A3P25940 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A3P25940 AL031590.1-202ENST00000641466 1737 ntBASIC17.24■□□□□ 0.35
COL5A3P25940 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.24■□□□□ 0.35
COL5A3P25940 NME1-209ENST00000511355 1645 ntTSL 5 BASIC17.24■□□□□ 0.35
COL5A3P25940 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms