Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
HMGA1P17096 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC14.63□□□□□ -0.07
HMGA1P17096 EEF1DP2-201ENST00000433698 843 ntBASIC14.63□□□□□ -0.07
HMGA1P17096 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.63□□□□□ -0.07
HMGA1P17096 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC14.63□□□□□ -0.07
HMGA1P17096 OR2A1-AS1-210ENST00000496968 531 ntBASIC14.63□□□□□ -0.07
HMGA1P17096 AC026410.1-201ENST00000507366 1101 ntBASIC14.63□□□□□ -0.07
HMGA1P17096 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC14.63□□□□□ -0.07
HMGA1P17096 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
HMGA1P17096 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HMGA1P17096 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.63□□□□□ -0.07
HMGA1P17096 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGA1P17096 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGA1P17096 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 TCAM1P-207ENST00000485295 1537 ntBASIC14.62□□□□□ -0.07
HMGA1P17096 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.62□□□□□ -0.07
HMGA1P17096 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
HMGA1P17096 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC14.62□□□□□ -0.07
HMGA1P17096 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGA1P17096 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC14.62□□□□□ -0.07
HMGA1P17096 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.62□□□□□ -0.07
HMGA1P17096 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGA1P17096 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 VENTXP3-201ENST00000546480 773 ntBASIC14.62□□□□□ -0.07
HMGA1P17096 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGA1P17096 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGA1P17096 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC14.62□□□□□ -0.07
HMGA1P17096 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 AC012073.1-201ENST00000606114 1108 ntBASIC14.62□□□□□ -0.07
HMGA1P17096 AC117503.4-201ENST00000623229 1418 ntBASIC14.62□□□□□ -0.07
HMGA1P17096 AC090643.2-201ENST00000623442 2029 ntBASIC14.62□□□□□ -0.07
HMGA1P17096 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC14.62□□□□□ -0.07
HMGA1P17096 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HMGA1P17096 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGA1P17096 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 PCDHA3-202ENST00000532566 4594 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms