Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 USP17L6P-201ENST00000382470 1197 ntBASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 AL353637.1-201ENST00000451571 732 ntBASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 AC090643.2-201ENST00000623442 2029 ntBASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 LBH-202ENST00000401506 485 ntTSL 3 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AC007274.2-201ENST00000421675 662 ntBASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 TSPY25P-201ENST00000429463 745 ntBASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 RNA5SP423-201ENST00000517127 109 ntBASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 POU5F1P2-201ENST00000521750 823 ntBASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MIR3188-201ENST00000583494 85 ntBASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AL353770.1-201ENST00000614915 403 ntBASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 LINC01165-201ENST00000445190 1623 ntBASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A3BPQ9Y5P4 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms