Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 USP17L6P-201ENST00000382470 1197 ntBASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 HIST2H2BB-201ENST00000449108 381 ntBASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AP006547.1-201ENST00000563435 692 ntBASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AL731571.1-201ENST00000617058 5428 ntBASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC073869.1-201ENST00000415574 2762 ntBASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC006001.1-201ENST00000325130 474 ntBASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC112492.5-201ENST00000421897 457 ntBASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 CROCCP4-201ENST00000457096 498 ntBASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 ZACNP1-201ENST00000612259 710 ntBASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 COL6A4P2-202ENST00000504443 2753 ntBASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLHC1Q8NHS4 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms