Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 C1QTNF9B-202ENST00000382140 1825 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 HDAC7-230ENST00000552960 3216 ntAPPRIS ALT2 TSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 MARCH5-201ENST00000358935 3926 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 SACS-202ENST00000402364 15134 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 ZNF789-209ENST00000483089 2994 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 EIF5-205ENST00000558506 4384 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 IGF2BP2-204ENST00000457616 3426 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 SEPT10-201ENST00000356688 3091 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 C8B-206ENST00000543257 2382 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 BRD1-202ENST00000404034 4312 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 UNC13D-202ENST00000412096 3648 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 ZC3H3-201ENST00000262577 3280 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 CR2-202ENST00000367058 4063 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 AC005865.1-201ENST00000432994 3004 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 ZWINT-203ENST00000373944 1872 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 UGT1A5-201ENST00000373414 2345 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 CDK5RAP3-202ENST00000536708 1975 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 SNX12-207ENST00000622277 2422 ntAPPRIS P3 TSL 4 BASIC8.81□□□□□ -1
LINC00643Q86TS7 PCDHGB8P-202ENST00000507007 2873 ntBASIC8.81□□□□□ -1
LINC00643Q86TS7 MCAM-201ENST00000264036 3313 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 DGKH-202ENST00000337343 4246 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 ISM2-202ENST00000342219 2971 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 ATAT1-202ENST00000319027 2061 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 AC138150.2-201ENST00000589796 2053 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 KCNH6-201ENST00000314672 3062 ntAPPRIS ALT2 TSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 OTOG-201ENST00000342528 4992 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 DLG5-201ENST00000372391 7415 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 ARHGAP36-203ENST00000370922 2736 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 RSBN1-206ENST00000616024 2703 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 JUP-202ENST00000393930 3298 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC8.81□□□□□ -1
LINC00643Q86TS7 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC8.81□□□□□ -1
LINC00643Q86TS7 COA5-202ENST00000409997 557 ntTSL 4 BASIC8.81□□□□□ -1
LINC00643Q86TS7 PRYP5-201ENST00000451909 266 ntBASIC8.81□□□□□ -1
LINC00643Q86TS7 BX284668.4-201ENST00000453917 508 ntBASIC8.81□□□□□ -1
LINC00643Q86TS7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC8.81□□□□□ -1
LINC00643Q86TS7 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC8.81□□□□□ -1
LINC00643Q86TS7 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC8.81□□□□□ -1
LINC00643Q86TS7 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 LOXHD1-204ENST00000398705 1824 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 ITIH5-209ENST00000613909 2916 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 LINC02486-201ENST00000604157 3000 ntBASIC8.81□□□□□ -1
LINC00643Q86TS7 IFT80-201ENST00000326448 4306 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 ERBB2-203ENST00000445658 3238 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 UBE3B-203ENST00000434735 5620 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 AL359641.1-201ENST00000412509 1558 ntBASIC8.81□□□□□ -1
LINC00643Q86TS7 FBLN1-203ENST00000340923 2348 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC8.81□□□□□ -1
LINC00643Q86TS7 TMEM8B-201ENST00000377988 3731 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 FOXD2-AS1-201ENST00000445551 2509 ntBASIC8.81□□□□□ -1
LINC00643Q86TS7 OTUD6B-206ENST00000617869 3294 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC8.81□□□□□ -1
LINC00643Q86TS7 TEX13D-201ENST00000632372 4203 ntAPPRIS P1 BASIC8.81□□□□□ -1
LINC00643Q86TS7 IRAK2-201ENST00000256458 3483 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 MST1R-215ENST00000621387 4449 ntTSL 1 (best) BASIC8.81□□□□□ -1
LINC00643Q86TS7 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 SOCS2-AS1-201ENST00000499137 3325 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 AVIL-201ENST00000257861 2891 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 C10orf76-202ENST00000370033 4119 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 RBMX-201ENST00000320676 2012 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 SPRY2-202ENST00000377104 2111 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 LRRC8E-201ENST00000306708 3595 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 AMPD2-201ENST00000256578 3899 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 LINC00540-203ENST00000631321 2412 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 LAMB3-201ENST00000356082 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 GREM2-201ENST00000318160 4170 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 TP53-222ENST00000617185 2724 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 NT5E-201ENST00000257770 3548 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms