Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.83□□□□□ -0.19
COL28A1Q2UY09 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL28A1Q2UY09 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.83□□□□□ -0.19
COL28A1Q2UY09 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL28A1Q2UY09 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL28A1Q2UY09 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 SNX15-201ENST00000352068 771 ntTSL 5 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 DUTP3-201ENST00000450025 415 ntBASIC13.83□□□□□ -0.2
COL28A1Q2UY09 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 ORAOV1P1-201ENST00000503108 395 ntBASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AC027237.1-201ENST00000560942 655 ntBASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AC006548.2-201ENST00000605217 529 ntBASIC13.83□□□□□ -0.2
COL28A1Q2UY09 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 CICP20-201ENST00000443330 2801 ntBASIC13.83□□□□□ -0.2
COL28A1Q2UY09 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 AC107918.4-201ENST00000641966 3141 ntBASIC13.83□□□□□ -0.2
COL28A1Q2UY09 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL28A1Q2UY09 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 ZNF436-AS1-201ENST00000335648 2547 ntBASIC13.82□□□□□ -0.2
COL28A1Q2UY09 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 PGAM1P12-201ENST00000505622 748 ntBASIC13.82□□□□□ -0.2
COL28A1Q2UY09 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 AP000911.2-201ENST00000534330 502 ntBASIC13.82□□□□□ -0.2
COL28A1Q2UY09 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 DUX4L47-201ENST00000566374 394 ntBASIC13.82□□□□□ -0.2
COL28A1Q2UY09 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 AC009884.2-201ENST00000603110 324 ntBASIC13.82□□□□□ -0.2
COL28A1Q2UY09 AC005041.3-201ENST00000606287 649 ntBASIC13.82□□□□□ -0.2
COL28A1Q2UY09 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 AC006504.5-208ENST00000588784 2401 ntBASIC13.82□□□□□ -0.2
COL28A1Q2UY09 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL28A1Q2UY09 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms