Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
GFRA1P56159 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
GFRA1P56159 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.78□□□□□ -0.36
GFRA1P56159 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.78□□□□□ -0.36
GFRA1P56159 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
GFRA1P56159 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
GFRA1P56159 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC12.77□□□□□ -0.36
GFRA1P56159 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 CICP4-201ENST00000447359 2812 ntBASIC12.77□□□□□ -0.36
GFRA1P56159 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
GFRA1P56159 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
GFRA1P56159 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 AL591122.2-201ENST00000624125 1853 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.77□□□□□ -0.37
GFRA1P56159 AC092506.1-202ENST00000401022 528 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 HINT2P1-201ENST00000419438 481 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 PPP1R2P4-201ENST00000424051 595 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC12.77□□□□□ -0.37
GFRA1P56159 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC12.77□□□□□ -0.37
GFRA1P56159 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC12.77□□□□□ -0.37
GFRA1P56159 FGFR3P1-201ENST00000449999 601 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 TMEM198B-204ENST00000484016 896 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 CMC2-204ENST00000562713 573 ntTSL 3 BASIC12.77□□□□□ -0.37
GFRA1P56159 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 CMC2-209ENST00000565108 399 ntTSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 RN7SL455P-201ENST00000580629 282 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC12.77□□□□□ -0.37
GFRA1P56159 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 HSPA7-201ENST00000445535 1927 ntBASIC12.77□□□□□ -0.37
GFRA1P56159 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC12.77□□□□□ -0.37
GFRA1P56159 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC12.77□□□□□ -0.37
GFRA1P56159 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
GFRA1P56159 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 AL627422.1-201ENST00000434104 580 ntBASIC12.76□□□□□ -0.37
GFRA1P56159 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC12.76□□□□□ -0.37
GFRA1P56159 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC12.76□□□□□ -0.37
GFRA1P56159 CHCHD2P9-201ENST00000461726 456 ntBASIC12.76□□□□□ -0.37
GFRA1P56159 RN7SL81P-201ENST00000493781 261 ntBASIC12.76□□□□□ -0.37
GFRA1P56159 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC12.76□□□□□ -0.37
GFRA1P56159 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.76□□□□□ -0.37
GFRA1P56159 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC12.76□□□□□ -0.37
GFRA1P56159 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 DUT-208ENST00000559540 1441 ntTSL 2 BASIC12.76□□□□□ -0.37
GFRA1P56159 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
GFRA1P56159 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
GFRA1P56159 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms