Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ORC6-206ENST00000568364 888 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CR1P49238 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC12.66□□□□□ -0.38
CX3CR1P49238 AC132192.2-201ENST00000596206 1147 ntBASIC12.66□□□□□ -0.38
CX3CR1P49238 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CR1P49238 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC12.66□□□□□ -0.38
CX3CR1P49238 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
CX3CR1P49238 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 PDIA3P1-201ENST00000471856 1510 ntBASIC12.66□□□□□ -0.38
CX3CR1P49238 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CX3CR1P49238 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CX3CR1P49238 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CX3CR1P49238 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CR1P49238 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
CX3CR1P49238 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 AK6-201ENST00000380818 1183 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC12.65□□□□□ -0.38
CX3CR1P49238 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC12.65□□□□□ -0.38
CX3CR1P49238 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CX3CR1P49238 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CR1P49238 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CR1P49238 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CX3CR1P49238 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CX3CR1P49238 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 LINC02486-201ENST00000604157 3000 ntBASIC12.64□□□□□ -0.39
CX3CR1P49238 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms