Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.28■□□□□ 0.36
COL5A3P25940 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC17.28■□□□□ 0.36
COL5A3P25940 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL5A3P25940 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL5A3P25940 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC17.28■□□□□ 0.36
COL5A3P25940 SNORA47-201ENST00000458862 138 ntBASIC17.28■□□□□ 0.36
COL5A3P25940 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL5A3P25940 AC026412.1-206ENST00000502273 206 ntBASIC17.28■□□□□ 0.36
COL5A3P25940 CETN3-205ENST00000522842 664 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL5A3P25940 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 AL137028.2-201ENST00000614601 256 ntBASIC17.28■□□□□ 0.36
COL5A3P25940 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC17.28■□□□□ 0.36
COL5A3P25940 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL5A3P25940 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC17.28■□□□□ 0.36
COL5A3P25940 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL5A3P25940 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A3P25940 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 ERG-211ENST00000453032 1595 ntTSL 2 BASIC17.27■□□□□ 0.36
COL5A3P25940 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 RPL35P1-201ENST00000450819 370 ntBASIC17.27■□□□□ 0.36
COL5A3P25940 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC17.27■□□□□ 0.36
COL5A3P25940 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL5A3P25940 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC17.27■□□□□ 0.36
COL5A3P25940 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.27■□□□□ 0.36
COL5A3P25940 DDC-212ENST00000615193 1674 ntTSL 3 BASIC17.27■□□□□ 0.36
COL5A3P25940 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
COL5A3P25940 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC17.27■□□□□ 0.36
COL5A3P25940 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL5A3P25940 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A3P25940 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A3P25940 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.27■□□□□ 0.35
COL5A3P25940 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A3P25940 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC17.27■□□□□ 0.35
COL5A3P25940 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A3P25940 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A3P25940 RFNG-202ENST00000429557 994 ntTSL 5 BASIC17.27■□□□□ 0.35
COL5A3P25940 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A3P25940 RBM14-205ENST00000443702 732 ntTSL 3 BASIC17.27■□□□□ 0.35
COL5A3P25940 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC17.27■□□□□ 0.35
COL5A3P25940 RN7SL173P-201ENST00000461853 292 ntBASIC17.27■□□□□ 0.35
COL5A3P25940 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC17.27■□□□□ 0.35
COL5A3P25940 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC17.27■□□□□ 0.35
COL5A3P25940 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC17.27■□□□□ 0.35
COL5A3P25940 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC17.27■□□□□ 0.35
COL5A3P25940 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC17.27■□□□□ 0.35
COL5A3P25940 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC17.27■□□□□ 0.35
COL5A3P25940 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A3P25940 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL5A3P25940 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A3P25940 SNORA50D-201ENST00000408059 134 ntBASIC17.26■□□□□ 0.35
COL5A3P25940 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A3P25940 AL356000.1-201ENST00000441073 1238 ntBASIC17.26■□□□□ 0.35
COL5A3P25940 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms