Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 LINC00115-201ENST00000473798 1317 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HMGB1P09429 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB1P09429 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
HMGB1P09429 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGB1P09429 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 AC089987.1-201ENST00000551654 2209 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB1P09429 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB1P09429 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 AMT-256ENST00000638063 1783 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB1P09429 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB1P09429 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 AC011742.3-201ENST00000439053 820 ntBASIC16.87■□□□□ 0.29
HMGB1P09429 AC004898.1-201ENST00000451057 766 ntBASIC16.87■□□□□ 0.29
HMGB1P09429 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB1P09429 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.87■□□□□ 0.29
HMGB1P09429 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB1P09429 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB1P09429 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 AL157813.1-201ENST00000612996 587 ntBASIC16.87■□□□□ 0.29
HMGB1P09429 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
HMGB1P09429 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB1P09429 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.87■□□□□ 0.29
HMGB1P09429 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.87■□□□□ 0.29
HMGB1P09429 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB1P09429 AC015909.5-201ENST00000624336 2266 ntBASIC16.87■□□□□ 0.29
HMGB1P09429 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGB1P09429 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB1P09429 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB1P09429 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB1P09429 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB1P09429 MAPT-IT1-201ENST00000624111 3016 ntBASIC16.86■□□□□ 0.29
HMGB1P09429 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HMGB1P09429 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB1P09429 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB1P09429 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB1P09429 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
HMGB1P09429 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB1P09429 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGB1P09429 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGB1P09429 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGB1P09429 TSPY25P-201ENST00000429463 745 ntBASIC16.86■□□□□ 0.29
HMGB1P09429 AC104306.2-201ENST00000451877 341 ntBASIC16.86■□□□□ 0.29
HMGB1P09429 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGB1P09429 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGB1P09429 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB1P09429 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB1P09429 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.86■□□□□ 0.29
HMGB1P09429 AL033527.4-201ENST00000641026 673 ntBASIC16.86■□□□□ 0.29
HMGB1P09429 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HMGB1P09429 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.86■□□□□ 0.29
HMGB1P09429 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB1P09429 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB1P09429 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HMGB1P09429 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGB1P09429 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms