Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 BX664725.1-201ENST00000438252 379 ntBASIC18.22■□□□□ 0.51
FOXA2Q9Y261 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA2Q9Y261 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 AC009299.2-201ENST00000482477 511 ntBASIC18.21■□□□□ 0.51
FOXA2Q9Y261 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
FOXA2Q9Y261 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
FOXA2Q9Y261 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.21■□□□□ 0.5
FOXA2Q9Y261 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 AL117328.2-201ENST00000624617 1940 ntBASIC18.2■□□□□ 0.5
FOXA2Q9Y261 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA2Q9Y261 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 AC137630.3-201ENST00000607245 391 ntBASIC18.19■□□□□ 0.5
FOXA2Q9Y261 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA2Q9Y261 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 KRT125P-201ENST00000546827 989 ntBASIC18.18■□□□□ 0.5
FOXA2Q9Y261 Z92544.1-202ENST00000571933 1220 ntBASIC18.18■□□□□ 0.5
FOXA2Q9Y261 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA2Q9Y261 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
FOXA2Q9Y261 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms