Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.67■□□□□ 0.9
EXOSC3Q9NQT5 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
EXOSC3Q9NQT5 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
EXOSC3Q9NQT5 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.67■□□□□ 0.9
EXOSC3Q9NQT5 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
EXOSC3Q9NQT5 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
EXOSC3Q9NQT5 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
EXOSC3Q9NQT5 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.65■□□□□ 0.9
EXOSC3Q9NQT5 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.65■□□□□ 0.9
EXOSC3Q9NQT5 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.65■□□□□ 0.9
EXOSC3Q9NQT5 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.65■□□□□ 0.9
EXOSC3Q9NQT5 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
EXOSC3Q9NQT5 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.65■□□□□ 0.9
EXOSC3Q9NQT5 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.64■□□□□ 0.9
EXOSC3Q9NQT5 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
EXOSC3Q9NQT5 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.64■□□□□ 0.9
EXOSC3Q9NQT5 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 MTDHP2-201ENST00000601468 714 ntBASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.64■□□□□ 0.89
EXOSC3Q9NQT5 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
EXOSC3Q9NQT5 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
EXOSC3Q9NQT5 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
EXOSC3Q9NQT5 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
EXOSC3Q9NQT5 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
EXOSC3Q9NQT5 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.63■□□□□ 0.89
EXOSC3Q9NQT5 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
EXOSC3Q9NQT5 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
EXOSC3Q9NQT5 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
EXOSC3Q9NQT5 AL035685.1-201ENST00000636663 812 ntBASIC20.62■□□□□ 0.89
EXOSC3Q9NQT5 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.62■□□□□ 0.89
EXOSC3Q9NQT5 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
EXOSC3Q9NQT5 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
EXOSC3Q9NQT5 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 DUSP8P3-201ENST00000399571 1760 ntBASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
EXOSC3Q9NQT5 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 AC010997.5-201ENST00000609182 354 ntBASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
EXOSC3Q9NQT5 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
EXOSC3Q9NQT5 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.58■□□□□ 0.89
EXOSC3Q9NQT5 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
EXOSC3Q9NQT5 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.58■□□□□ 0.89
EXOSC3Q9NQT5 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.58■□□□□ 0.89
EXOSC3Q9NQT5 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.58■□□□□ 0.89
EXOSC3Q9NQT5 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms