Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.31■□□□□ 0.68
PTX4Q96A99 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTX4Q96A99 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.31■□□□□ 0.68
PTX4Q96A99 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTX4Q96A99 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTX4Q96A99 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTX4Q96A99 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PTX4Q96A99 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTX4Q96A99 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTX4Q96A99 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.3■□□□□ 0.68
PTX4Q96A99 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.3■□□□□ 0.68
PTX4Q96A99 AC011551.1-201ENST00000614101 683 ntBASIC19.3■□□□□ 0.68
PTX4Q96A99 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTX4Q96A99 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PTX4Q96A99 AC131274.2-201ENST00000580697 1507 ntBASIC19.3■□□□□ 0.68
PTX4Q96A99 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.29■□□□□ 0.68
PTX4Q96A99 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTX4Q96A99 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PTX4Q96A99 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTX4Q96A99 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PTX4Q96A99 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
PTX4Q96A99 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.29■□□□□ 0.68
PTX4Q96A99 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.29■□□□□ 0.68
PTX4Q96A99 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTX4Q96A99 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTX4Q96A99 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PTX4Q96A99 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTX4Q96A99 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.28■□□□□ 0.68
PTX4Q96A99 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PTX4Q96A99 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PTX4Q96A99 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.28■□□□□ 0.68
PTX4Q96A99 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PTX4Q96A99 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTX4Q96A99 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.28■□□□□ 0.68
PTX4Q96A99 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTX4Q96A99 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PTX4Q96A99 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTX4Q96A99 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTX4Q96A99 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PTX4Q96A99 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.27■□□□□ 0.68
PTX4Q96A99 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PTX4Q96A99 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PTX4Q96A99 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.26■□□□□ 0.67
PTX4Q96A99 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTX4Q96A99 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTX4Q96A99 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTX4Q96A99 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.25■□□□□ 0.67
PTX4Q96A99 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.25■□□□□ 0.67
PTX4Q96A99 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTX4Q96A99 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
PTX4Q96A99 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTX4Q96A99 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.25■□□□□ 0.67
PTX4Q96A99 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTX4Q96A99 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTX4Q96A99 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.25■□□□□ 0.67
PTX4Q96A99 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTX4Q96A99 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.24■□□□□ 0.67
PTX4Q96A99 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.24■□□□□ 0.67
PTX4Q96A99 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.24■□□□□ 0.67
PTX4Q96A99 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTX4Q96A99 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTX4Q96A99 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTX4Q96A99 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTX4Q96A99 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.24■□□□□ 0.67
PTX4Q96A99 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.24■□□□□ 0.67
PTX4Q96A99 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTX4Q96A99 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PTX4Q96A99 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.23■□□□□ 0.67
PTX4Q96A99 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms