Protein–RNA interactions for Protein: Q8WWA1

TMEM40, Transmembrane protein 40, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM40Q8WWA1 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TMEM40Q8WWA1 AC099791.1-201ENST00000416440 715 ntBASIC24.8■■□□□ 1.56
TMEM40Q8WWA1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.8■■□□□ 1.56
TMEM40Q8WWA1 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TMEM40Q8WWA1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.8■■□□□ 1.56
TMEM40Q8WWA1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.8■■□□□ 1.56
TMEM40Q8WWA1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TMEM40Q8WWA1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TMEM40Q8WWA1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
TMEM40Q8WWA1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.78■■□□□ 1.56
TMEM40Q8WWA1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
TMEM40Q8WWA1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.78■■□□□ 1.56
TMEM40Q8WWA1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.78■■□□□ 1.56
TMEM40Q8WWA1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
TMEM40Q8WWA1 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 pRNA.6-201ENST00000610482 90 ntBASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 pRNA.5-201ENST00000612139 90 ntBASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 pRNA.11-201ENST00000618423 90 ntBASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 pRNA.13-201ENST00000619112 90 ntBASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
TMEM40Q8WWA1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TMEM40Q8WWA1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TMEM40Q8WWA1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TMEM40Q8WWA1 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TMEM40Q8WWA1 ASB1-202ENST00000409297 878 ntTSL 5 BASIC24.75■■□□□ 1.55
TMEM40Q8WWA1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
TMEM40Q8WWA1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TMEM40Q8WWA1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TMEM40Q8WWA1 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.73■■□□□ 1.55
TMEM40Q8WWA1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC24.73■■□□□ 1.55
TMEM40Q8WWA1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TMEM40Q8WWA1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TMEM40Q8WWA1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 BX842568.3-201ENST00000418104 571 ntBASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 AC233992.3-201ENST00000607491 485 ntBASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TMEM40Q8WWA1 AC141586.4-201ENST00000624558 1573 ntBASIC24.71■■□□□ 1.55
TMEM40Q8WWA1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TMEM40Q8WWA1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.71■■□□□ 1.55
TMEM40Q8WWA1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
TMEM40Q8WWA1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.71■■□□□ 1.55
TMEM40Q8WWA1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC24.71■■□□□ 1.55
TMEM40Q8WWA1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TMEM40Q8WWA1 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
TMEM40Q8WWA1 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TMEM40Q8WWA1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TMEM40Q8WWA1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TMEM40Q8WWA1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TMEM40Q8WWA1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
TMEM40Q8WWA1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
TMEM40Q8WWA1 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
TMEM40Q8WWA1 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
TMEM40Q8WWA1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
TMEM40Q8WWA1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TMEM40Q8WWA1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms