Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SHROOM3Q8TF72 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SHROOM3Q8TF72 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
SHROOM3Q8TF72 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.14■■□□□ 1.3
SHROOM3Q8TF72 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM3Q8TF72 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 AC092068.2-201ENST00000590491 1708 ntBASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SHROOM3Q8TF72 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHROOM3Q8TF72 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
SHROOM3Q8TF72 MIR6722-201ENST00000617286 78 ntBASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.1■■□□□ 1.29
SHROOM3Q8TF72 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 DUSP8P5-201ENST00000422884 1815 ntBASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 AC131281.2-201ENST00000520478 145 ntBASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
SHROOM3Q8TF72 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SHROOM3Q8TF72 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SHROOM3Q8TF72 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SHROOM3Q8TF72 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SHROOM3Q8TF72 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SHROOM3Q8TF72 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SHROOM3Q8TF72 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
SHROOM3Q8TF72 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.28
SHROOM3Q8TF72 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 ANOS2P-203ENST00000472227 1816 ntBASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.07■■□□□ 1.28
SHROOM3Q8TF72 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 C9orf163-202ENST00000624034 2573 ntBASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
SHROOM3Q8TF72 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SHROOM3Q8TF72 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SHROOM3Q8TF72 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms