Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 MIR4281-201ENST00000580852 62 ntBASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP4Q8N3C7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 AC103834.1-201ENST00000520383 144 ntBASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP4Q8N3C7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.02■□□□□ 0.95
CLIP4Q8N3C7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLIP4Q8N3C7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 MIR4508-201ENST00000584178 70 ntBASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 ANOS2P-203ENST00000472227 1816 ntBASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CLIP4Q8N3C7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21■□□□□ 0.95
CLIP4Q8N3C7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21■□□□□ 0.95
CLIP4Q8N3C7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21■□□□□ 0.95
CLIP4Q8N3C7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21■□□□□ 0.95
CLIP4Q8N3C7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CLIP4Q8N3C7 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLIP4Q8N3C7 ALDH1A3-203ENST00000557963 1670 ntBASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP4Q8N3C7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
CLIP4Q8N3C7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 KRT8P33-201ENST00000508125 1423 ntBASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP4Q8N3C7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms