Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 AC142381.2-201ENST00000566120 298 ntBASIC20.92■□□□□ 0.94
BEST3Q8N1M1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.92■□□□□ 0.94
BEST3Q8N1M1 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BEST3Q8N1M1 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BEST3Q8N1M1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BEST3Q8N1M1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BEST3Q8N1M1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.91■□□□□ 0.94
BEST3Q8N1M1 C17orf82-201ENST00000623772 1530 ntBASIC20.91■□□□□ 0.94
BEST3Q8N1M1 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BEST3Q8N1M1 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BEST3Q8N1M1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BEST3Q8N1M1 AL031432.3-201ENST00000607698 485 ntBASIC20.9■□□□□ 0.94
BEST3Q8N1M1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.9■□□□□ 0.94
BEST3Q8N1M1 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.9■□□□□ 0.94
BEST3Q8N1M1 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BEST3Q8N1M1 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BEST3Q8N1M1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
BEST3Q8N1M1 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
BEST3Q8N1M1 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.89■□□□□ 0.94
BEST3Q8N1M1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BEST3Q8N1M1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BEST3Q8N1M1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BEST3Q8N1M1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BEST3Q8N1M1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BEST3Q8N1M1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
BEST3Q8N1M1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BEST3Q8N1M1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 EDA-201ENST00000338901 1233 ntBASIC20.88■□□□□ 0.93
BEST3Q8N1M1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 SERBP1P1-201ENST00000396021 1160 ntBASIC20.88■□□□□ 0.93
BEST3Q8N1M1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BEST3Q8N1M1 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.87■□□□□ 0.93
BEST3Q8N1M1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 SUDS3P1-201ENST00000505831 966 ntBASIC20.87■□□□□ 0.93
BEST3Q8N1M1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 AL355001.2-201ENST00000620617 1191 ntBASIC20.87■□□□□ 0.93
BEST3Q8N1M1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BEST3Q8N1M1 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BEST3Q8N1M1 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
BEST3Q8N1M1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
BEST3Q8N1M1 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.86■□□□□ 0.93
BEST3Q8N1M1 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BEST3Q8N1M1 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BEST3Q8N1M1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.86■□□□□ 0.93
BEST3Q8N1M1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.86■□□□□ 0.93
BEST3Q8N1M1 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 MIR4767-201ENST00000582827 78 ntBASIC20.85■□□□□ 0.93
BEST3Q8N1M1 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 AC241377.3-202ENST00000626088 1088 ntBASIC20.85■□□□□ 0.93
BEST3Q8N1M1 AC241585.3-202ENST00000628937 1088 ntBASIC20.85■□□□□ 0.93
BEST3Q8N1M1 AC245100.8-202ENST00000629247 1058 ntBASIC20.85■□□□□ 0.93
BEST3Q8N1M1 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BEST3Q8N1M1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BEST3Q8N1M1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms