Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 MIR4767-201ENST00000582827 78 ntBASIC28.36■■■□□ 2.13
UBE3BQ7Z3V4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
UBE3BQ7Z3V4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28.35■■■□□ 2.13
UBE3BQ7Z3V4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
UBE3BQ7Z3V4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
UBE3BQ7Z3V4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC28.35■■■□□ 2.13
UBE3BQ7Z3V4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
UBE3BQ7Z3V4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 GRAMD4P4-201ENST00000613563 1115 ntBASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 AL355001.2-201ENST00000620617 1191 ntBASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 AC009086.3-201ENST00000623486 1008 ntBASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 LINC00543-201ENST00000567234 1845 ntBASIC28.34■■■□□ 2.13
UBE3BQ7Z3V4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
UBE3BQ7Z3V4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
UBE3BQ7Z3V4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
UBE3BQ7Z3V4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC28.33■■■□□ 2.13
UBE3BQ7Z3V4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
UBE3BQ7Z3V4 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
UBE3BQ7Z3V4 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
UBE3BQ7Z3V4 AF213884.3-201ENST00000563833 479 ntBASIC28.32■■■□□ 2.12
UBE3BQ7Z3V4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
UBE3BQ7Z3V4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
UBE3BQ7Z3V4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
UBE3BQ7Z3V4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
UBE3BQ7Z3V4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 AP001330.3-201ENST00000520123 633 ntBASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 AC011298.3-201ENST00000615796 283 ntBASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
UBE3BQ7Z3V4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 ZNRF2P3-201ENST00000424200 374 ntBASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 MIR3181-201ENST00000578512 73 ntBASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 AL138724.1-201ENST00000606771 1088 ntBASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 AL136967.2-201ENST00000623968 743 ntBASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 AC004812.2-201ENST00000611079 2094 ntBASIC28.3■■■□□ 2.12
UBE3BQ7Z3V4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
UBE3BQ7Z3V4 AC141586.4-201ENST00000624558 1573 ntBASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 MIR939-201ENST00000401314 82 ntBASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
UBE3BQ7Z3V4 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
UBE3BQ7Z3V4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
UBE3BQ7Z3V4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
UBE3BQ7Z3V4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
UBE3BQ7Z3V4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC28.25■■■□□ 2.11
UBE3BQ7Z3V4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.25■■■□□ 2.11
UBE3BQ7Z3V4 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
UBE3BQ7Z3V4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC28.25■■■□□ 2.11
UBE3BQ7Z3V4 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
UBE3BQ7Z3V4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
UBE3BQ7Z3V4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
UBE3BQ7Z3V4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
UBE3BQ7Z3V4 HYI-206ENST00000372434 1025 ntTSL 5 BASIC28.24■■■□□ 2.11
UBE3BQ7Z3V4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
UBE3BQ7Z3V4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC28.24■■■□□ 2.11
UBE3BQ7Z3V4 AC136469.2-201ENST00000623944 1028 ntBASIC28.24■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms