Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD3Q3KNS1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
PTCHD3Q3KNS1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
PTCHD3Q3KNS1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD3Q3KNS1 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD3Q3KNS1 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 MIR6724-1-201ENST00000616420 92 ntBASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 MIR6724-2-201ENST00000616483 92 ntBASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 MIR6724-4-201ENST00000617390 92 ntBASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 MIR6724-3-201ENST00000622482 92 ntBASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.05■■□□□ 1.12
PTCHD3Q3KNS1 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 AL117332.1-201ENST00000622628 974 ntBASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD3Q3KNS1 DUSP8P5-201ENST00000422884 1815 ntBASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD3Q3KNS1 ANOS2P-203ENST00000472227 1816 ntBASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
PTCHD3Q3KNS1 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
PTCHD3Q3KNS1 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 AC131281.2-201ENST00000520478 145 ntBASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD3Q3KNS1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTCHD3Q3KNS1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 MIR3621-201ENST00000580529 85 ntBASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 MIR6722-201ENST00000617286 78 ntBASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms