Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.18■■□□□ 1.3
SOX9P48436 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SOX9P48436 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.18■■□□□ 1.3
SOX9P48436 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SOX9P48436 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SOX9P48436 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
SOX9P48436 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.17■■□□□ 1.3
SOX9P48436 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
SOX9P48436 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SOX9P48436 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.17■■□□□ 1.3
SOX9P48436 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.17■■□□□ 1.3
SOX9P48436 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SOX9P48436 SLC47A1P1-202ENST00000449666 945 ntBASIC23.17■■□□□ 1.3
SOX9P48436 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.17■■□□□ 1.3
SOX9P48436 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.17■■□□□ 1.3
SOX9P48436 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.17■■□□□ 1.3
SOX9P48436 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
SOX9P48436 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SOX9P48436 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SOX9P48436 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.16■■□□□ 1.3
SOX9P48436 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SOX9P48436 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SOX9P48436 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SOX9P48436 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SOX9P48436 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
SOX9P48436 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.16■■□□□ 1.3
SOX9P48436 ALDH1A3-203ENST00000557963 1670 ntBASIC23.16■■□□□ 1.3
SOX9P48436 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.16■■□□□ 1.3
SOX9P48436 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SOX9P48436 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SOX9P48436 AC034268.1-201ENST00000441047 882 ntBASIC23.15■■□□□ 1.3
SOX9P48436 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.15■■□□□ 1.3
SOX9P48436 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SOX9P48436 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.15■■□□□ 1.3
SOX9P48436 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SOX9P48436 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SOX9P48436 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SOX9P48436 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
SOX9P48436 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SOX9P48436 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SOX9P48436 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.14■■□□□ 1.29
SOX9P48436 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.14■■□□□ 1.29
SOX9P48436 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SOX9P48436 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SOX9P48436 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.14■■□□□ 1.29
SOX9P48436 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SOX9P48436 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SOX9P48436 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.14■■□□□ 1.29
SOX9P48436 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.14■■□□□ 1.29
SOX9P48436 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SOX9P48436 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.13■■□□□ 1.29
SOX9P48436 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.13■■□□□ 1.29
SOX9P48436 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.13■■□□□ 1.29
SOX9P48436 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
SOX9P48436 AL161729.1-201ENST00000604104 1402 ntBASIC23.13■■□□□ 1.29
SOX9P48436 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SOX9P48436 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.12■■□□□ 1.29
SOX9P48436 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SOX9P48436 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SOX9P48436 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.12■■□□□ 1.29
SOX9P48436 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
SOX9P48436 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.12■■□□□ 1.29
SOX9P48436 YBX1P1-201ENST00000445822 960 ntBASIC23.12■■□□□ 1.29
SOX9P48436 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SOX9P48436 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SOX9P48436 AC022517.1-201ENST00000592429 346 ntBASIC23.12■■□□□ 1.29
SOX9P48436 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.12■■□□□ 1.29
SOX9P48436 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SOX9P48436 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SOX9P48436 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX9P48436 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.11■■□□□ 1.29
SOX9P48436 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX9P48436 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.11■■□□□ 1.29
SOX9P48436 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.11■■□□□ 1.29
SOX9P48436 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
SOX9P48436 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX9P48436 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
SOX9P48436 KRT18P5-201ENST00000436075 1291 ntBASIC23.11■■□□□ 1.29
SOX9P48436 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.11■■□□□ 1.29
SOX9P48436 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.11■■□□□ 1.29
SOX9P48436 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX9P48436 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.11■■□□□ 1.29
SOX9P48436 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX9P48436 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.11■■□□□ 1.29
SOX9P48436 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.11■■□□□ 1.29
SOX9P48436 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX9P48436 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SOX9P48436 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SOX9P48436 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.1■■□□□ 1.29
SOX9P48436 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SOX9P48436 AC090192.1-201ENST00000517740 490 ntBASIC23.1■■□□□ 1.29
SOX9P48436 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SOX9P48436 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.1■■□□□ 1.29
SOX9P48436 MIR6084-201ENST00000622012 110 ntBASIC23.1■■□□□ 1.29
SOX9P48436 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SOX9P48436 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.1■■□□□ 1.29
SOX9P48436 AC141586.4-201ENST00000624558 1573 ntBASIC23.1■■□□□ 1.29
SOX9P48436 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SOX9P48436 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.09■■□□□ 1.29
SOX9P48436 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms