Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
SCN1AP35498 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SCN1AP35498 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SCN1AP35498 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SCN1AP35498 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC24.22■■□□□ 1.47
SCN1AP35498 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SCN1AP35498 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
SCN1AP35498 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SCN1AP35498 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
SCN1AP35498 AC099791.2-201ENST00000605725 427 ntBASIC24.22■■□□□ 1.47
SCN1AP35498 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SCN1AP35498 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
SCN1AP35498 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SCN1AP35498 ASB1-202ENST00000409297 878 ntTSL 5 BASIC24.2■■□□□ 1.47
SCN1AP35498 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
SCN1AP35498 AC106739.1-201ENST00000617035 715 ntBASIC24.2■■□□□ 1.47
SCN1AP35498 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SCN1AP35498 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
SCN1AP35498 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SCN1AP35498 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.2■■□□□ 1.46
SCN1AP35498 AL139246.5-201ENST00000606645 996 ntBASIC24.2■■□□□ 1.46
SCN1AP35498 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SCN1AP35498 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SCN1AP35498 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.19■■□□□ 1.46
SCN1AP35498 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.19■■□□□ 1.46
SCN1AP35498 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SCN1AP35498 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SCN1AP35498 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SCN1AP35498 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SCN1AP35498 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SCN1AP35498 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SCN1AP35498 AC079630.1-202ENST00000618127 1840 ntBASIC24.18■■□□□ 1.46
SCN1AP35498 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 AC024257.2-201ENST00000549699 147 ntBASIC24.18■■□□□ 1.46
SCN1AP35498 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 AC093323.1-202ENST00000635031 2045 ntBASIC24.18■■□□□ 1.46
SCN1AP35498 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.18■■□□□ 1.46
SCN1AP35498 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 UNC93B3-201ENST00000308076 687 ntBASIC24.18■■□□□ 1.46
SCN1AP35498 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.18■■□□□ 1.46
SCN1AP35498 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SCN1AP35498 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
SCN1AP35498 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
SCN1AP35498 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.17■■□□□ 1.46
SCN1AP35498 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SCN1AP35498 SERBP1P1-201ENST00000396021 1160 ntBASIC24.17■■□□□ 1.46
SCN1AP35498 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.17■■□□□ 1.46
SCN1AP35498 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SCN1AP35498 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SCN1AP35498 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.17■■□□□ 1.46
SCN1AP35498 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SCN1AP35498 DUX4L19-201ENST00000557448 1267 ntBASIC24.17■■□□□ 1.46
SCN1AP35498 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.17■■□□□ 1.46
SCN1AP35498 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.17■■□□□ 1.46
SCN1AP35498 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC24.16■■□□□ 1.46
SCN1AP35498 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.16■■□□□ 1.46
SCN1AP35498 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 SRD5A1P1-201ENST00000442297 786 ntBASIC24.16■■□□□ 1.46
SCN1AP35498 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.16■■□□□ 1.46
SCN1AP35498 AL031432.3-201ENST00000607698 485 ntBASIC24.16■■□□□ 1.46
SCN1AP35498 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.16■■□□□ 1.46
SCN1AP35498 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SCN1AP35498 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SCN1AP35498 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SCN1AP35498 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.15■■□□□ 1.46
SCN1AP35498 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.15■■□□□ 1.46
SCN1AP35498 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.15■■□□□ 1.46
SCN1AP35498 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
SCN1AP35498 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
SCN1AP35498 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.15■■□□□ 1.46
SCN1AP35498 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.15■■□□□ 1.46
SCN1AP35498 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
SCN1AP35498 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
SCN1AP35498 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
SCN1AP35498 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SCN1AP35498 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
SCN1AP35498 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.14■■□□□ 1.45
SCN1AP35498 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SCN1AP35498 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
SCN1AP35498 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SCN1AP35498 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.13■■□□□ 1.45
SCN1AP35498 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.13■■□□□ 1.45
SCN1AP35498 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.13■■□□□ 1.45
SCN1AP35498 AC241377.3-202ENST00000626088 1088 ntBASIC24.13■■□□□ 1.45
SCN1AP35498 AC241585.3-202ENST00000628937 1088 ntBASIC24.13■■□□□ 1.45
SCN1AP35498 AC245100.8-202ENST00000629247 1058 ntBASIC24.13■■□□□ 1.45
SCN1AP35498 AC135279.3-201ENST00000610945 1311 ntBASIC24.13■■□□□ 1.45
SCN1AP35498 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms