Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL8A1P27658 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL8A1P27658 AC006015.1-201ENST00000429970 570 ntBASIC19.82■□□□□ 0.76
COL8A1P27658 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.82■□□□□ 0.76
COL8A1P27658 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.82■□□□□ 0.76
COL8A1P27658 IGHV3-19-201ENST00000521488 291 ntBASIC19.82■□□□□ 0.76
COL8A1P27658 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.82■□□□□ 0.76
COL8A1P27658 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL8A1P27658 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.82■□□□□ 0.76
COL8A1P27658 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL8A1P27658 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL8A1P27658 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL8A1P27658 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
COL8A1P27658 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL8A1P27658 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL8A1P27658 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL8A1P27658 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.81■□□□□ 0.76
COL8A1P27658 CD99P1-205ENST00000527459 561 ntBASIC19.81■□□□□ 0.76
COL8A1P27658 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.81■□□□□ 0.76
COL8A1P27658 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.81■□□□□ 0.76
COL8A1P27658 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.81■□□□□ 0.76
COL8A1P27658 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.81■□□□□ 0.76
COL8A1P27658 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL8A1P27658 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.8■□□□□ 0.76
COL8A1P27658 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.8■□□□□ 0.76
COL8A1P27658 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.8■□□□□ 0.76
COL8A1P27658 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL8A1P27658 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL8A1P27658 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL8A1P27658 AC006970.2-201ENST00000450065 779 ntBASIC19.8■□□□□ 0.76
COL8A1P27658 AC137761.2-201ENST00000561729 223 ntBASIC19.8■□□□□ 0.76
COL8A1P27658 AC145350.3-201ENST00000569033 163 ntBASIC19.8■□□□□ 0.76
COL8A1P27658 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
COL8A1P27658 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
COL8A1P27658 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL8A1P27658 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL8A1P27658 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL8A1P27658 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.79■□□□□ 0.76
COL8A1P27658 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
COL8A1P27658 KRT18P61-201ENST00000585825 1298 ntBASIC19.79■□□□□ 0.76
COL8A1P27658 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL8A1P27658 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.79■□□□□ 0.76
COL8A1P27658 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.79■□□□□ 0.76
COL8A1P27658 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL8A1P27658 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL8A1P27658 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL8A1P27658 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL8A1P27658 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.78■□□□□ 0.76
COL8A1P27658 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL8A1P27658 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL8A1P27658 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL8A1P27658 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL8A1P27658 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL8A1P27658 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL8A1P27658 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL8A1P27658 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL8A1P27658 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL8A1P27658 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL8A1P27658 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL8A1P27658 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.77■□□□□ 0.76
COL8A1P27658 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
COL8A1P27658 CROCCP5-201ENST00000436658 830 ntBASIC19.77■□□□□ 0.76
COL8A1P27658 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.77■□□□□ 0.76
COL8A1P27658 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL8A1P27658 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL8A1P27658 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
COL8A1P27658 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.77■□□□□ 0.76
COL8A1P27658 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.77■□□□□ 0.76
COL8A1P27658 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL8A1P27658 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL8A1P27658 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL8A1P27658 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL8A1P27658 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL8A1P27658 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
COL8A1P27658 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.76■□□□□ 0.75
COL8A1P27658 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL8A1P27658 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL8A1P27658 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.76■□□□□ 0.75
COL8A1P27658 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.76■□□□□ 0.75
COL8A1P27658 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL8A1P27658 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.76■□□□□ 0.75
COL8A1P27658 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.75■□□□□ 0.75
COL8A1P27658 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL8A1P27658 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.75■□□□□ 0.75
COL8A1P27658 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL8A1P27658 AP005435.1-201ENST00000529293 1178 ntBASIC19.75■□□□□ 0.75
COL8A1P27658 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.75■□□□□ 0.75
COL8A1P27658 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.75■□□□□ 0.75
COL8A1P27658 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL8A1P27658 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL8A1P27658 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL8A1P27658 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL8A1P27658 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms