Protein–RNA interactions for Protein: P0C0E4

RAB40AL, Ras-related protein Rab-40A-like, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40ALP0C0E4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RAB40ALP0C0E4 RASA4CP-201ENST00000424092 1398 ntBASIC21.32■■□□□ 1
RAB40ALP0C0E4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.32■■□□□ 1
RAB40ALP0C0E4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.32■■□□□ 1
RAB40ALP0C0E4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.32■■□□□ 1
RAB40ALP0C0E4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.31■■□□□ 1
RAB40ALP0C0E4 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.31■■□□□ 1
RAB40ALP0C0E4 RARRES2P6-201ENST00000567333 442 ntBASIC21.31■■□□□ 1
RAB40ALP0C0E4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 ALDH1A3-203ENST00000557963 1670 ntBASIC21.31■■□□□ 1
RAB40ALP0C0E4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
RAB40ALP0C0E4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RAB40ALP0C0E4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RAB40ALP0C0E4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
RAB40ALP0C0E4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RAB40ALP0C0E4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.3■■□□□ 1
RAB40ALP0C0E4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.3■■□□□ 1
RAB40ALP0C0E4 AC027682.1-201ENST00000562846 899 ntBASIC21.3■■□□□ 1
RAB40ALP0C0E4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.3■■□□□ 1
RAB40ALP0C0E4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.3■■□□□ 1
RAB40ALP0C0E4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.3■■□□□ 1
RAB40ALP0C0E4 AC136469.2-201ENST00000623944 1028 ntBASIC21.3■■□□□ 1
RAB40ALP0C0E4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.3■■□□□ 1
RAB40ALP0C0E4 AP003733.4-201ENST00000623785 1697 ntBASIC21.3■■□□□ 1
RAB40ALP0C0E4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.3■■□□□ 1
RAB40ALP0C0E4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RAB40ALP0C0E4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RAB40ALP0C0E4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
RAB40ALP0C0E4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RAB40ALP0C0E4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RAB40ALP0C0E4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.29■■□□□ 1
RAB40ALP0C0E4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RAB40ALP0C0E4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.29■■□□□ 1
RAB40ALP0C0E4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.29■■□□□ 1
RAB40ALP0C0E4 AC009086.3-201ENST00000623486 1008 ntBASIC21.29■■□□□ 1
RAB40ALP0C0E4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
RAB40ALP0C0E4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.29■■□□□ 1
RAB40ALP0C0E4 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.29■■□□□ 1
RAB40ALP0C0E4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.28■■□□□ 1
RAB40ALP0C0E4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RAB40ALP0C0E4 CA15P2-201ENST00000611168 834 ntBASIC21.28■■□□□ 1
RAB40ALP0C0E4 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.28■■□□□ 1
RAB40ALP0C0E4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RAB40ALP0C0E4 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.27■■□□□ 1
RAB40ALP0C0E4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.27■■□□□ 1
RAB40ALP0C0E4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.27■■□□□ 1
RAB40ALP0C0E4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.27■■□□□ 1
RAB40ALP0C0E4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.27■■□□□ 1
RAB40ALP0C0E4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.27■■□□□ 1
RAB40ALP0C0E4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RAB40ALP0C0E4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RAB40ALP0C0E4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 AC026271.2-201ENST00000428091 497 ntBASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 AC006455.2-201ENST00000429931 906 ntBASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 MIR3181-201ENST00000578512 73 ntBASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAB40ALP0C0E4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RAB40ALP0C0E4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RAB40ALP0C0E4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RAB40ALP0C0E4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.24■□□□□ 0.99
RAB40ALP0C0E4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RAB40ALP0C0E4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RAB40ALP0C0E4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RAB40ALP0C0E4 AC022211.4-201ENST00000625094 2161 ntBASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 AC008764.7-201ENST00000593779 1081 ntBASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB40ALP0C0E4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RAB40ALP0C0E4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms