Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.49■□□□□ 0.39
CXCL1P09341 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.49■□□□□ 0.39
CXCL1P09341 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 AC026310.3-201ENST00000625186 2373 ntBASIC17.49■□□□□ 0.39
CXCL1P09341 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CXCL1P09341 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
CXCL1P09341 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC17.49■□□□□ 0.39
CXCL1P09341 CHST11-203ENST00000547956 936 ntTSL 2 BASIC17.49■□□□□ 0.39
CXCL1P09341 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC17.49■□□□□ 0.39
CXCL1P09341 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CXCL1P09341 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
CXCL1P09341 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 AC092068.2-201ENST00000590491 1708 ntBASIC17.49■□□□□ 0.39
CXCL1P09341 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL1P09341 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CXCL1P09341 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.48■□□□□ 0.39
CXCL1P09341 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CXCL1P09341 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.48■□□□□ 0.39
CXCL1P09341 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC17.48■□□□□ 0.39
CXCL1P09341 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.48■□□□□ 0.39
CXCL1P09341 CHST11-202ENST00000546689 756 ntTSL 2 BASIC17.48■□□□□ 0.39
CXCL1P09341 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CXCL1P09341 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC17.48■□□□□ 0.39
CXCL1P09341 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CXCL1P09341 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL1P09341 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL1P09341 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
CXCL1P09341 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC17.47■□□□□ 0.39
CXCL1P09341 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL1P09341 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
CXCL1P09341 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.47■□□□□ 0.39
CXCL1P09341 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL1P09341 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CXCL1P09341 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC17.47■□□□□ 0.39
CXCL1P09341 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17.47■□□□□ 0.39
CXCL1P09341 HLA-L-211ENST00000482052 1765 ntBASIC17.47■□□□□ 0.39
CXCL1P09341 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL1P09341 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL1P09341 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CXCL1P09341 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL1P09341 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL1P09341 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.46■□□□□ 0.39
CXCL1P09341 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 MIR6089-201ENST00000616698 64 ntBASIC17.46■□□□□ 0.39
CXCL1P09341 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.46■□□□□ 0.39
CXCL1P09341 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.46■□□□□ 0.39
CXCL1P09341 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL1P09341 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL1P09341 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL1P09341 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL1P09341 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL1P09341 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL1P09341 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CXCL1P09341 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL1P09341 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CXCL1P09341 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL1P09341 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL1P09341 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.44■□□□□ 0.38
CXCL1P09341 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CXCL1P09341 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.44■□□□□ 0.38
CXCL1P09341 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CXCL1P09341 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CXCL1P09341 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CXCL1P09341 AC126177.7-201ENST00000547904 679 ntBASIC17.44■□□□□ 0.38
CXCL1P09341 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CXCL1P09341 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
CXCL1P09341 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CXCL1P09341 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CXCL1P09341 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms