Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 ECEL1P1-201ENST00000373592 1742 ntBASIC20.22■□□□□ 0.83
HLA-DPB1P04440 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HLA-DPB1P04440 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 AC139795.1-202ENST00000500444 432 ntBASIC20.21■□□□□ 0.83
HLA-DPB1P04440 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 BHLHE23-202ENST00000612929 1109 ntBASIC20.21■□□□□ 0.83
HLA-DPB1P04440 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DPB1P04440 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.2■□□□□ 0.82
HLA-DPB1P04440 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DPB1P04440 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DPB1P04440 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DPB1P04440 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.16■□□□□ 0.82
HLA-DPB1P04440 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 AL161729.1-201ENST00000604104 1402 ntBASIC20.15■□□□□ 0.82
HLA-DPB1P04440 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DPB1P04440 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms