Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LDLRP01130 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.66■■□□□ 1.06
LDLRP01130 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LDLRP01130 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
LDLRP01130 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDLRP01130 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.65■■□□□ 1.06
LDLRP01130 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.65■■□□□ 1.06
LDLRP01130 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDLRP01130 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LDLRP01130 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LDLRP01130 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LDLRP01130 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
LDLRP01130 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.64■■□□□ 1.05
LDLRP01130 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.64■■□□□ 1.05
LDLRP01130 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
LDLRP01130 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDLRP01130 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDLRP01130 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
LDLRP01130 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDLRP01130 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.63■■□□□ 1.05
LDLRP01130 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDLRP01130 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDLRP01130 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
LDLRP01130 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.62■■□□□ 1.05
LDLRP01130 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDLRP01130 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LDLRP01130 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LDLRP01130 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.61■■□□□ 1.05
LDLRP01130 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
LDLRP01130 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LDLRP01130 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.61■■□□□ 1.05
LDLRP01130 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.61■■□□□ 1.05
LDLRP01130 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
LDLRP01130 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LDLRP01130 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.61■■□□□ 1.05
LDLRP01130 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.61■■□□□ 1.05
LDLRP01130 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.61■■□□□ 1.05
LDLRP01130 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.61■■□□□ 1.05
LDLRP01130 EP400NL-214ENST00000641289 2402 ntBASIC21.61■■□□□ 1.05
LDLRP01130 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LDLRP01130 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
LDLRP01130 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LDLRP01130 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LDLRP01130 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.6■■□□□ 1.05
LDLRP01130 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDLRP01130 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDLRP01130 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDLRP01130 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LDLRP01130 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDLRP01130 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.6■■□□□ 1.05
LDLRP01130 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LDLRP01130 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
LDLRP01130 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDLRP01130 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.59■■□□□ 1.05
LDLRP01130 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
LDLRP01130 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.59■■□□□ 1.05
LDLRP01130 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.59■■□□□ 1.05
LDLRP01130 AC022616.5-201ENST00000518796 181 ntBASIC21.59■■□□□ 1.05
LDLRP01130 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LDLRP01130 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
LDLRP01130 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LDLRP01130 LINC00565-201ENST00000562710 2331 ntBASIC21.58■■□□□ 1.05
LDLRP01130 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
LDLRP01130 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LDLRP01130 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms