Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM13O60858 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM13O60858 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM13O60858 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM13O60858 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
TRIM13O60858 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.21■■□□□ 1.15
TRIM13O60858 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.21■■□□□ 1.15
TRIM13O60858 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM13O60858 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.21■■□□□ 1.15
TRIM13O60858 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.21■■□□□ 1.15
TRIM13O60858 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM13O60858 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM13O60858 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM13O60858 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
TRIM13O60858 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
TRIM13O60858 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM13O60858 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM13O60858 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.2■■□□□ 1.14
TRIM13O60858 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
TRIM13O60858 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.2■■□□□ 1.14
TRIM13O60858 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.2■■□□□ 1.14
TRIM13O60858 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM13O60858 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
TRIM13O60858 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRIM13O60858 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.19■■□□□ 1.14
TRIM13O60858 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRIM13O60858 U85056.1-201ENST00000616429 682 ntBASIC22.19■■□□□ 1.14
TRIM13O60858 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRIM13O60858 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
TRIM13O60858 ECEL1P1-201ENST00000373592 1742 ntBASIC22.19■■□□□ 1.14
TRIM13O60858 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.19■■□□□ 1.14
TRIM13O60858 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRIM13O60858 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRIM13O60858 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.18■■□□□ 1.14
TRIM13O60858 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.18■■□□□ 1.14
TRIM13O60858 AC022616.5-201ENST00000518796 181 ntBASIC22.18■■□□□ 1.14
TRIM13O60858 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.18■■□□□ 1.14
TRIM13O60858 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRIM13O60858 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.17■■□□□ 1.14
TRIM13O60858 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRIM13O60858 RARRES2P2-201ENST00000394842 485 ntBASIC22.17■■□□□ 1.14
TRIM13O60858 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.17■■□□□ 1.14
TRIM13O60858 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRIM13O60858 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRIM13O60858 AC019171.1-201ENST00000601251 1056 ntBASIC22.17■■□□□ 1.14
TRIM13O60858 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
TRIM13O60858 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
TRIM13O60858 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TRIM13O60858 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.17■■□□□ 1.14
TRIM13O60858 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRIM13O60858 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRIM13O60858 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.16■■□□□ 1.14
TRIM13O60858 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.16■■□□□ 1.14
TRIM13O60858 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.16■■□□□ 1.14
TRIM13O60858 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
TRIM13O60858 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
TRIM13O60858 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM13O60858 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM13O60858 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM13O60858 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.15■■□□□ 1.14
TRIM13O60858 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM13O60858 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM13O60858 AC127496.7-201ENST00000625110 1798 ntBASIC22.15■■□□□ 1.14
TRIM13O60858 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRIM13O60858 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRIM13O60858 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRIM13O60858 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRIM13O60858 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRIM13O60858 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRIM13O60858 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM13O60858 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM13O60858 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.14■■□□□ 1.13
TRIM13O60858 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM13O60858 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
TRIM13O60858 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM13O60858 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM13O60858 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.14■■□□□ 1.13
TRIM13O60858 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRIM13O60858 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRIM13O60858 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
TRIM13O60858 ESRRAP2-201ENST00000418437 1549 ntBASIC22.13■■□□□ 1.13
TRIM13O60858 KRT18P60-201ENST00000312876 1297 ntBASIC22.13■■□□□ 1.13
TRIM13O60858 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.13■■□□□ 1.13
TRIM13O60858 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.13■■□□□ 1.13
TRIM13O60858 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms