Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGN4O00479 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGN4O00479 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGN4O00479 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
HMGN4O00479 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGN4O00479 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGN4O00479 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGN4O00479 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGN4O00479 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.05■□□□□ 0.96
HMGN4O00479 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.05■□□□□ 0.96
HMGN4O00479 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.05■□□□□ 0.96
HMGN4O00479 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGN4O00479 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
HMGN4O00479 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
HMGN4O00479 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.05■□□□□ 0.96
HMGN4O00479 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGN4O00479 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGN4O00479 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGN4O00479 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGN4O00479 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.04■□□□□ 0.96
HMGN4O00479 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.04■□□□□ 0.96
HMGN4O00479 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.04■□□□□ 0.96
HMGN4O00479 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.04■□□□□ 0.96
HMGN4O00479 SNX5-217ENST00000606557 1087 ntBASIC21.04■□□□□ 0.96
HMGN4O00479 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.04■□□□□ 0.96
HMGN4O00479 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.04■□□□□ 0.96
HMGN4O00479 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HMGN4O00479 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGN4O00479 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGN4O00479 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.03■□□□□ 0.96
HMGN4O00479 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
HMGN4O00479 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.03■□□□□ 0.96
HMGN4O00479 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGN4O00479 AC137630.3-201ENST00000607245 391 ntBASIC21.03■□□□□ 0.96
HMGN4O00479 AL031848.2-201ENST00000607670 837 ntBASIC21.03■□□□□ 0.96
HMGN4O00479 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.03■□□□□ 0.96
HMGN4O00479 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGN4O00479 AC079630.1-202ENST00000618127 1840 ntBASIC21.03■□□□□ 0.96
HMGN4O00479 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGN4O00479 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.03■□□□□ 0.96
HMGN4O00479 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.03■□□□□ 0.96
HMGN4O00479 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGN4O00479 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
HMGN4O00479 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGN4O00479 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGN4O00479 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HMGN4O00479 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.02■□□□□ 0.96
HMGN4O00479 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.02■□□□□ 0.96
HMGN4O00479 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGN4O00479 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGN4O00479 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGN4O00479 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HMGN4O00479 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGN4O00479 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGN4O00479 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGN4O00479 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
HMGN4O00479 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGN4O00479 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
HMGN4O00479 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGN4O00479 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGN4O00479 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGN4O00479 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGN4O00479 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGN4O00479 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
HMGN4O00479 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.01■□□□□ 0.95
HMGN4O00479 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGN4O00479 C1orf229-201ENST00000623686 2258 ntBASIC21.01■□□□□ 0.95
HMGN4O00479 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
HMGN4O00479 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HMGN4O00479 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21■□□□□ 0.95
HMGN4O00479 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGN4O00479 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21■□□□□ 0.95
HMGN4O00479 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21■□□□□ 0.95
HMGN4O00479 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21■□□□□ 0.95
HMGN4O00479 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21■□□□□ 0.95
HMGN4O00479 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGN4O00479 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGN4O00479 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HMGN4O00479 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGN4O00479 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
HMGN4O00479 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGN4O00479 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGN4O00479 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HMGN4O00479 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGN4O00479 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
HMGN4O00479 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGN4O00479 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGN4O00479 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.98■□□□□ 0.95
HMGN4O00479 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms