Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC041040.2-201ENST00000622926 2899 ntBASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRIM39Q9HCM9 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 TSPY25P-201ENST00000429463 745 ntBASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 Z97180.1-201ENST00000445173 988 ntBASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 AC090857.1-201ENST00000527400 390 ntBASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
TRIM39Q9HCM9 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 AC239868.1-201ENST00000369385 493 ntBASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 BCYRN1-201ENST00000418539 200 ntBASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 RN7SL11P-201ENST00000471305 293 ntBASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 203.1 ms