Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 PCDHA6-201ENST00000378126 3267 ntBASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 AL596325.1-201ENST00000563991 1082 ntBASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4AQ8WYN0 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 STX3-207ENST00000633708 3111 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AC244394.1-201ENST00000435000 1665 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AC112492.5-201ENST00000421897 457 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AL157407.1-201ENST00000435784 904 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 CNN2P10-201ENST00000443067 918 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 MIR4783-201ENST00000580343 82 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 MIR6720-201ENST00000611664 98 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 AHCYP2-201ENST00000430630 1300 ntBASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4AQ8WYN0 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4AQ8WYN0 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4AQ8WYN0 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms