Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 ATP6V0CP2-201ENST00000469409 207 ntBASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 MIR3619-201ENST00000579667 83 ntBASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 NAT9-222ENST00000583476 583 ntTSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AL353726.2-201ENST00000623259 884 ntBASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AC148477.9-201ENST00000623974 539 ntBASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AL138799.1-201ENST00000448213 1675 ntBASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 MAPK10-262ENST00000641051 5738 ntBASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AC107918.4-201ENST00000641966 3141 ntBASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AC026954.1-201ENST00000429771 1293 ntBASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AC068587.3-201ENST00000526613 355 ntBASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CHMP4BP1-201ENST00000556017 588 ntBASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 MIR6074-201ENST00000612054 107 ntBASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AP003419.4-201ENST00000616071 517 ntBASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 KRT8P24-201ENST00000560290 1559 ntBASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms