Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AC136759.1-202ENST00000530858 2194 ntBASIC13.85□□□□□ -0.19
COL28A1Q2UY09 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 RN7SKP175-201ENST00000408472 289 ntBASIC13.85□□□□□ -0.19
COL28A1Q2UY09 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 MRPL22P1-201ENST00000505398 616 ntBASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AC004686.1-201ENST00000605113 538 ntBASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AC126335.2-201ENST00000623362 4637 ntBASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL28A1Q2UY09 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AJ011931.1-201ENST00000618749 2492 ntBASIC13.84□□□□□ -0.19
COL28A1Q2UY09 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AC010141.1-201ENST00000411585 623 ntBASIC13.84□□□□□ -0.19
COL28A1Q2UY09 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 THY1-209ENST00000580275 578 ntTSL 3 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AP001184.1-201ENST00000637936 376 ntBASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.84□□□□□ -0.19
COL28A1Q2UY09 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.83□□□□□ -0.19
COL28A1Q2UY09 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL28A1Q2UY09 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.83□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms