Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.04■□□□□ 0.16
CIITAP33076 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.04■□□□□ 0.16
CIITAP33076 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 AC019193.1-201ENST00000506678 823 ntBASIC16.04■□□□□ 0.16
CIITAP33076 IGLV3-15-201ENST00000518356 244 ntBASIC16.04■□□□□ 0.16
CIITAP33076 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CIITAP33076 AC084346.2-201ENST00000607097 949 ntBASIC16.04■□□□□ 0.16
CIITAP33076 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CIITAP33076 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CIITAP33076 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.04■□□□□ 0.16
CIITAP33076 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.04■□□□□ 0.16
CIITAP33076 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.04■□□□□ 0.16
CIITAP33076 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.03■□□□□ 0.16
CIITAP33076 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.03■□□□□ 0.16
CIITAP33076 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC16.03■□□□□ 0.16
CIITAP33076 LINC00265-2P-201ENST00000413372 782 ntBASIC16.03■□□□□ 0.16
CIITAP33076 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC16.03■□□□□ 0.16
CIITAP33076 MAGEA5-201ENST00000446757 942 ntBASIC16.03■□□□□ 0.16
CIITAP33076 EEF1DP6-201ENST00000449232 372 ntBASIC16.03■□□□□ 0.16
CIITAP33076 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC16.03■□□□□ 0.16
CIITAP33076 RPL18AP8-201ENST00000486071 528 ntBASIC16.03■□□□□ 0.16
CIITAP33076 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 RN7SL665P-201ENST00000578793 300 ntBASIC16.03■□□□□ 0.16
CIITAP33076 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.03■□□□□ 0.16
CIITAP33076 AC068587.10-201ENST00000641210 219 ntBASIC16.03■□□□□ 0.16
CIITAP33076 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.03■□□□□ 0.16
CIITAP33076 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC16.03■□□□□ 0.16
CIITAP33076 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
CIITAP33076 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC16.03■□□□□ 0.16
CIITAP33076 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 RCC2P1-201ENST00000452257 1476 ntBASIC16.03■□□□□ 0.16
CIITAP33076 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.03■□□□□ 0.16
CIITAP33076 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CIITAP33076 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.02■□□□□ 0.16
CIITAP33076 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CIITAP33076 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.02■□□□□ 0.16
CIITAP33076 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.02■□□□□ 0.16
CIITAP33076 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.02■□□□□ 0.16
CIITAP33076 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.02■□□□□ 0.16
CIITAP33076 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC16.02■□□□□ 0.16
CIITAP33076 AL591122.2-201ENST00000624125 1853 ntBASIC16.02■□□□□ 0.16
CIITAP33076 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.02■□□□□ 0.16
CIITAP33076 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC16.02■□□□□ 0.16
CIITAP33076 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.02■□□□□ 0.16
CIITAP33076 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.02■□□□□ 0.16
CIITAP33076 AC026316.1-201ENST00000398900 414 ntBASIC16.02■□□□□ 0.16
CIITAP33076 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.02■□□□□ 0.16
CIITAP33076 AL592076.1-201ENST00000424448 303 ntBASIC16.02■□□□□ 0.16
CIITAP33076 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.02■□□□□ 0.16
CIITAP33076 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.02■□□□□ 0.16
CIITAP33076 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CIITAP33076 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.02■□□□□ 0.16
CIITAP33076 PRKXP1-201ENST00000561423 1122 ntBASIC16.02■□□□□ 0.16
CIITAP33076 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.02■□□□□ 0.16
CIITAP33076 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CIITAP33076 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.02■□□□□ 0.15
CIITAP33076 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CIITAP33076 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CIITAP33076 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC16.02■□□□□ 0.15
CIITAP33076 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CIITAP33076 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms