Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.53□□□□□ -0.4
COL8A1P27658 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.53□□□□□ -0.4
COL8A1P27658 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.53□□□□□ -0.4
COL8A1P27658 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.52□□□□□ -0.4
COL8A1P27658 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.52□□□□□ -0.4
COL8A1P27658 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL8A1P27658 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.52□□□□□ -0.4
COL8A1P27658 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL8A1P27658 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
COL8A1P27658 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.52□□□□□ -0.4
COL8A1P27658 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL8A1P27658 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL8A1P27658 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL8A1P27658 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL8A1P27658 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.52□□□□□ -0.4
COL8A1P27658 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL8A1P27658 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
COL8A1P27658 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
COL8A1P27658 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.52□□□□□ -0.41
COL8A1P27658 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 SAT1-201ENST00000379251 801 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 SAT1-202ENST00000379253 909 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 SAT1-203ENST00000379254 868 ntTSL 3 BASIC12.52□□□□□ -0.41
COL8A1P27658 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 OR8T1P-201ENST00000421347 918 ntBASIC12.52□□□□□ -0.41
COL8A1P27658 AL451000.1-201ENST00000451300 1186 ntBASIC12.52□□□□□ -0.41
COL8A1P27658 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC12.52□□□□□ -0.41
COL8A1P27658 HINT1-205ENST00000508488 703 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 GCOM2-201ENST00000509133 1104 ntBASIC12.52□□□□□ -0.41
COL8A1P27658 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC12.52□□□□□ -0.41
COL8A1P27658 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC12.52□□□□□ -0.41
COL8A1P27658 AC023968.2-201ENST00000560593 1049 ntBASIC12.52□□□□□ -0.41
COL8A1P27658 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC12.52□□□□□ -0.41
COL8A1P27658 FBXO36P1-201ENST00000579006 471 ntBASIC12.52□□□□□ -0.41
COL8A1P27658 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC12.52□□□□□ -0.41
COL8A1P27658 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 FUCA1P1-201ENST00000374476 1351 ntBASIC12.52□□□□□ -0.41
COL8A1P27658 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC12.52□□□□□ -0.41
COL8A1P27658 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.52□□□□□ -0.41
COL8A1P27658 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL8A1P27658 AC013268.4-201ENST00000637413 2228 ntBASIC12.52□□□□□ -0.41
COL8A1P27658 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 OLA1P2-201ENST00000395519 1264 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 RPL14-203ENST00000416518 812 ntTSL 3 BASIC12.51□□□□□ -0.41
COL8A1P27658 AL691447.1-201ENST00000419456 387 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 AL512599.1-201ENST00000430724 685 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 KRT8P30-201ENST00000432100 650 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC12.51□□□□□ -0.41
COL8A1P27658 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 HIST1H2APS2-201ENST00000454426 370 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 SCARNA12-201ENST00000459155 270 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.51□□□□□ -0.41
COL8A1P27658 RN7SL564P-201ENST00000496309 250 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 RPS23-207ENST00000511844 530 ntTSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 242.2 ms