Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM47Q96LD4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM47Q96LD4 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM47Q96LD4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM47Q96LD4 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM47Q96LD4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM47Q96LD4 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM47Q96LD4 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC113367.3-201ENST00000508316 1912 ntBASIC16.8■□□□□ 0.28
TRIM47Q96LD4 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC117489.1-201ENST00000625169 3217 ntBASIC16.8■□□□□ 0.28
TRIM47Q96LD4 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 TLE1P1-201ENST00000422965 589 ntBASIC16.8■□□□□ 0.28
TRIM47Q96LD4 BCAS2P2-201ENST00000425064 674 ntBASIC16.8■□□□□ 0.28
TRIM47Q96LD4 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AGPAT5P1-201ENST00000455855 1019 ntBASIC16.8■□□□□ 0.28
TRIM47Q96LD4 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC084752.1-201ENST00000509766 622 ntBASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 AC097359.2-201ENST00000604992 2389 ntBASIC16.8■□□□□ 0.28
TRIM47Q96LD4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM47Q96LD4 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 ST20-AS1-201ENST00000560255 4223 ntBASIC16.79■□□□□ 0.28
TRIM47Q96LD4 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 HLA-DMA-203ENST00000395305 777 ntBASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 LINC00634-202ENST00000505157 222 ntBASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AC244250.3-201ENST00000620749 366 ntBASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AC138466.5-201ENST00000624002 808 ntBASIC16.79■□□□□ 0.28
TRIM47Q96LD4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.79■□□□□ 0.28
TRIM47Q96LD4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM47Q96LD4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 BX640514.1-201ENST00000583223 1918 ntBASIC16.78■□□□□ 0.28
TRIM47Q96LD4 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TRIM47Q96LD4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms