Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL805961.1-203ENST00000641078 1258 ntBASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 LINC01815-202ENST00000641468 1409 ntBASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.57□□□□□ -0.08
SHROOM3Q8TF72 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ACTG1P2-201ENST00000415776 1125 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ACTG1P11-201ENST00000425411 1125 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 SPTLC1P5-201ENST00000450718 252 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC005740.2-201ENST00000511085 419 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ALG1L13P-202ENST00000519320 584 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AC018635.2-201ENST00000608625 364 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 BEND3P1-201ENST00000421591 1944 ntBASIC14.56□□□□□ -0.08
SHROOM3Q8TF72 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms