Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 INE2-201ENST00000630399 1874 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 DRD5P1-201ENST00000456605 1438 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 AL137784.3-201ENST00000623858 2288 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 RPS3-201ENST00000278572 907 ntTSL 3 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 AC091046.1-201ENST00000331871 207 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 PTP4A1P2-201ENST00000546033 454 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 DUX4L47-201ENST00000566374 394 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 PRKN-211ENST00000615065 261 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 AL603764.1-201ENST00000636452 321 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 AC138627.1-207ENST00000641560 1006 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 CIC-204ENST00000572681 8218 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 TCAM1P-207ENST00000485295 1537 ntBASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 RERG-209ENST00000546331 1383 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 REEP1-202ENST00000453231 940 ntTSL 2 BASIC12.05□□□□□ -0.48
PDLIM3Q53GG5 BX284668.4-201ENST00000453917 508 ntBASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms