Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 NME1-209ENST00000511355 1645 ntTSL 5 BASIC16.32■□□□□ 0.2
SCN4AP35499 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SCN4AP35499 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SCN4AP35499 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 NRADDP-202ENST00000641269 1585 ntBASIC16.32■□□□□ 0.2
SCN4AP35499 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SCN4AP35499 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SCN4AP35499 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC16.31■□□□□ 0.2
SCN4AP35499 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC16.31■□□□□ 0.2
SCN4AP35499 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SCN4AP35499 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC16.31■□□□□ 0.2
SCN4AP35499 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC16.31■□□□□ 0.2
SCN4AP35499 AL137028.2-201ENST00000614601 256 ntBASIC16.31■□□□□ 0.2
SCN4AP35499 MIR6165-201ENST00000614803 84 ntBASIC16.31■□□□□ 0.2
SCN4AP35499 AL109954.3-201ENST00000615088 558 ntBASIC16.31■□□□□ 0.2
SCN4AP35499 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SCN4AP35499 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SCN4AP35499 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC16.31■□□□□ 0.2
SCN4AP35499 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.31■□□□□ 0.2
SCN4AP35499 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SCN4AP35499 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC16.31■□□□□ 0.2
SCN4AP35499 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC16.31■□□□□ 0.2
SCN4AP35499 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SCN4AP35499 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SCN4AP35499 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 AL022313.4-201ENST00000562756 2046 ntBASIC16.3■□□□□ 0.2
SCN4AP35499 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SCN4AP35499 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.3■□□□□ 0.2
SCN4AP35499 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 MIR181D-201ENST00000384853 137 ntBASIC16.3■□□□□ 0.2
SCN4AP35499 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SCN4AP35499 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SCN4AP35499 RPSAP61-201ENST00000412542 878 ntBASIC16.3■□□□□ 0.2
SCN4AP35499 PTPA-219ENST00000435305 530 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC16.3■□□□□ 0.2
SCN4AP35499 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 RN7SL47P-201ENST00000488710 299 ntBASIC16.3■□□□□ 0.2
SCN4AP35499 AC114812.4-201ENST00000506676 757 ntBASIC16.3■□□□□ 0.2
SCN4AP35499 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC16.3■□□□□ 0.2
SCN4AP35499 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC16.3■□□□□ 0.2
SCN4AP35499 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC16.3■□□□□ 0.2
SCN4AP35499 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
SCN4AP35499 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
SCN4AP35499 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SCN4AP35499 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 AC138035.3-201ENST00000622706 2791 ntBASIC16.3■□□□□ 0.2
SCN4AP35499 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SCN4AP35499 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.3■□□□□ 0.2
SCN4AP35499 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.29■□□□□ 0.2
SCN4AP35499 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 PMF1-201ENST00000368273 884 ntTSL 2 BASIC16.29■□□□□ 0.2
SCN4AP35499 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms