Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CREB5-205ENST00000409603 1944 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 RPL10P12-201ENST00000427342 318 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 AL390726.1-201ENST00000451357 202 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 RN7SL646P-201ENST00000492969 297 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 OR7E126P-201ENST00000526217 888 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 AC087190.3-201ENST00000562893 753 ntTSL 3 BASIC14.29□□□□□ -0.12
COL6A3P12111 B9D1-213ENST00000575403 928 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 ANXA13-201ENST00000262219 1588 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 AC084018.2-201ENST00000613093 2607 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A3P12111 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL6A3P12111 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL6A3P12111 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A3P12111 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A3P12111 ACTBP1-201ENST00000417985 1113 ntBASIC14.28□□□□□ -0.12
COL6A3P12111 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A3P12111 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 SNAPC5-207ENST00000566658 574 ntAPPRIS ALT2 TSL 4 BASIC14.28□□□□□ -0.12
COL6A3P12111 AC109460.2-202ENST00000568057 573 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A3P12111 OPN1MW-201ENST00000595290 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A3P12111 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL6A3P12111 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 PAUPAR-201ENST00000630360 2965 ntBASIC14.28□□□□□ -0.12
COL6A3P12111 MEG3-214ENST00000519709 1726 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A3P12111 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A3P12111 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.28□□□□□ -0.12
COL6A3P12111 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
COL6A3P12111 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 PRDX1-203ENST00000372079 609 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A3P12111 OR2A15P-201ENST00000463814 900 ntBASIC14.28□□□□□ -0.12
COL6A3P12111 SYNPR-AS1-201ENST00000488201 558 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A3P12111 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A3P12111 SMIM22-201ENST00000586005 366 ntAPPRIS P4 TSL 3 BASIC14.28□□□□□ -0.12
COL6A3P12111 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 AC010997.1-201ENST00000447646 350 ntBASIC14.28□□□□□ -0.12
COL6A3P12111 AC108082.1-201ENST00000510857 331 ntBASIC14.28□□□□□ -0.12
COL6A3P12111 KRT16P1-202ENST00000577750 679 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A3P12111 LINC00963-217ENST00000624009 663 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A3P12111 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A3P12111 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A3P12111 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A3P12111 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A3P12111 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
COL6A3P12111 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 GSTM2P1-201ENST00000405166 654 ntBASIC14.27□□□□□ -0.12
COL6A3P12111 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.27□□□□□ -0.12
COL6A3P12111 BNC2-207ENST00000471301 745 ntTSL 3 BASIC14.27□□□□□ -0.12
COL6A3P12111 MTND6P4-201ENST00000506002 522 ntBASIC14.27□□□□□ -0.12
COL6A3P12111 IGHVII-74-1-201ENST00000517572 241 ntBASIC14.27□□□□□ -0.12
COL6A3P12111 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A3P12111 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC14.27□□□□□ -0.12
COL6A3P12111 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC14.27□□□□□ -0.12
COL6A3P12111 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC14.27□□□□□ -0.12
COL6A3P12111 AC024580.2-201ENST00000623363 231 ntBASIC14.27□□□□□ -0.12
COL6A3P12111 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
COL6A3P12111 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A3P12111 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A3P12111 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL6A3P12111 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A3P12111 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 RHCE-203ENST00000346452 971 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A3P12111 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A3P12111 TMEM161B-AS1-204ENST00000504636 1039 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A3P12111 LINC02163-201ENST00000514769 574 ntTSL 4 BASIC14.27□□□□□ -0.13
COL6A3P12111 MIR6880-201ENST00000622851 62 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms