Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC006504.5-208ENST00000588784 2401 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AL590440.2-201ENST00000641973 1595 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 CEP164P1-201ENST00000455142 418 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC008723.1-201ENST00000506922 207 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 MIR4706-201ENST00000582134 82 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC006453.1-201ENST00000636037 1257 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC018629.1-201ENST00000623381 1736 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 AC009093.10-201ENST00000641956 1442 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 KHSRPP1-201ENST00000427983 1768 ntBASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NPIPA3F8WFD2 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 KRT8P28-201ENST00000433288 1390 ntBASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 UFM1-202ENST00000379649 846 ntTSL 4 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 MPRIPP1-201ENST00000452433 1089 ntBASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms