Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC097474.1-201ENST00000506481 1371 ntBASIC13.74□□□□□ -0.21
VPS13AQ96RL7 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 MPV17-209ENST00000405983 859 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 RPSAP70-201ENST00000504462 864 ntBASIC13.74□□□□□ -0.21
VPS13AQ96RL7 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 CCL19-202ENST00000378800 414 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 RPL10-203ENST00000406022 748 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 RN7SL832P-201ENST00000607781 1756 ntBASIC13.74□□□□□ -0.21
VPS13AQ96RL7 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 AC215219.1-201ENST00000400706 1817 ntBASIC13.74□□□□□ -0.21
VPS13AQ96RL7 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13AQ96RL7 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 FAM223B-202ENST00000598177 713 ntBASIC13.73□□□□□ -0.21
VPS13AQ96RL7 FAM223A-202ENST00000625204 713 ntBASIC13.73□□□□□ -0.21
VPS13AQ96RL7 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 TBC1D27-202ENST00000424239 1573 ntBASIC13.73□□□□□ -0.21
VPS13AQ96RL7 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 AC123912.6-201ENST00000612657 315 ntBASIC13.73□□□□□ -0.21
VPS13AQ96RL7 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 AP001267.2-201ENST00000532619 2086 ntBASIC13.73□□□□□ -0.21
VPS13AQ96RL7 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms