Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SMIM26-201ENST00000411646 505 ntAPPRIS P5 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 OR8T1P-201ENST00000421347 918 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AL773545.2-201ENST00000442149 472 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 STK24P1-201ENST00000455035 1291 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 TREX1-203ENST00000456089 629 ntTSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 RN7SL363P-201ENST00000482412 273 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AC004801.1-201ENST00000549557 360 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 BMF-206ENST00000558774 671 ntTSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 NT5C-204ENST00000578337 582 ntTSL 2 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AC121493.1-201ENST00000602316 450 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 OR3A1-202ENST00000615105 966 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AC106881.1-201ENST00000605849 3329 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 MIR611-201ENST00000384869 67 ntBASIC15.47■□□□□ 0.07
LRCH3Q96II8 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AC025594.1-201ENST00000469533 543 ntBASIC15.47■□□□□ 0.07
LRCH3Q96II8 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 RN7SL672P-201ENST00000474091 317 ntBASIC15.47■□□□□ 0.07
LRCH3Q96II8 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 RN7SL375P-201ENST00000492442 298 ntBASIC15.47■□□□□ 0.07
LRCH3Q96II8 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AC079414.2-201ENST00000567157 1104 ntBASIC15.47■□□□□ 0.07
LRCH3Q96II8 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 PRMT1P1-201ENST00000604252 1009 ntBASIC15.47■□□□□ 0.07
LRCH3Q96II8 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 AC027348.2-201ENST00000624375 642 ntBASIC15.47■□□□□ 0.07
LRCH3Q96II8 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.47■□□□□ 0.07
LRCH3Q96II8 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRCH3Q96II8 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms