Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AL807761.2-201ENST00000422849 729 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC078875.1-201ENST00000431907 724 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AL354861.1-201ENST00000445213 355 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 KLF2P1-201ENST00000447438 1042 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC093909.3-201ENST00000504783 336 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 PHBP15-201ENST00000574228 665 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC021016.3-201ENST00000608367 477 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 HMGB1P24-201ENST00000611897 328 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AL137783.1-201ENST00000623494 1896 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ST20-AS1-201ENST00000560255 4223 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 AP000593.2-201ENST00000542775 1433 ntBASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL28A1Q2UY09 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AC023141.7-201ENST00000430646 407 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 RN7SL81P-201ENST00000493781 261 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 MIR5001-201ENST00000580185 100 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 AC055811.3-201ENST00000584952 686 ntBASIC13.87□□□□□ -0.19
COL28A1Q2UY09 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
COL28A1Q2UY09 DBP-202ENST00000593500 712 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms