Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.82■□□□□ 0.28
NEDD4P46934 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
NEDD4P46934 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.82■□□□□ 0.28
NEDD4P46934 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 KRT17P5-201ENST00000332088 839 ntBASIC16.82■□□□□ 0.28
NEDD4P46934 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.82■□□□□ 0.28
NEDD4P46934 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.82■□□□□ 0.28
NEDD4P46934 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC16.82■□□□□ 0.28
NEDD4P46934 KRT18P15-201ENST00000458108 1291 ntBASIC16.82■□□□□ 0.28
NEDD4P46934 AC245884.6-201ENST00000515672 1067 ntBASIC16.82■□□□□ 0.28
NEDD4P46934 POU5F1P2-201ENST00000521750 823 ntBASIC16.82■□□□□ 0.28
NEDD4P46934 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.82■□□□□ 0.28
NEDD4P46934 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.82■□□□□ 0.28
NEDD4P46934 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
NEDD4P46934 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.82■□□□□ 0.28
NEDD4P46934 AC007718.1-201ENST00000621078 280 ntBASIC16.82■□□□□ 0.28
NEDD4P46934 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.82■□□□□ 0.28
NEDD4P46934 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.82■□□□□ 0.28
NEDD4P46934 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEDD4P46934 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.82■□□□□ 0.28
NEDD4P46934 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.81■□□□□ 0.28
NEDD4P46934 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.81■□□□□ 0.28
NEDD4P46934 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
NEDD4P46934 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 AGAP10P-201ENST00000454844 2418 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 AL662890.1-201ENST00000396818 632 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.81■□□□□ 0.28
NEDD4P46934 BANF1P3-201ENST00000412556 261 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 AC007274.2-201ENST00000421675 662 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.81■□□□□ 0.28
NEDD4P46934 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC16.81■□□□□ 0.28
NEDD4P46934 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.81■□□□□ 0.28
NEDD4P46934 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.81■□□□□ 0.28
NEDD4P46934 ALG1L13P-202ENST00000519320 584 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 AC026803.1-201ENST00000569130 274 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 SKA2-205ENST00000580541 689 ntTSL 3 BASIC16.81■□□□□ 0.28
NEDD4P46934 CAP2P1-201ENST00000557743 1390 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
NEDD4P46934 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.81■□□□□ 0.28
NEDD4P46934 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC16.81■□□□□ 0.28
NEDD4P46934 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
NEDD4P46934 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 AC111170.3-201ENST00000624282 2464 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
NEDD4P46934 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.81■□□□□ 0.28
NEDD4P46934 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 AL928654.5-201ENST00000624831 2501 ntBASIC16.81■□□□□ 0.28
NEDD4P46934 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEDD4P46934 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
NEDD4P46934 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.8■□□□□ 0.28
NEDD4P46934 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.8■□□□□ 0.28
NEDD4P46934 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
NEDD4P46934 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEDD4P46934 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.8■□□□□ 0.28
NEDD4P46934 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.8■□□□□ 0.28
NEDD4P46934 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.8■□□□□ 0.28
NEDD4P46934 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.8■□□□□ 0.28
NEDD4P46934 AC105129.2-201ENST00000559536 390 ntBASIC16.8■□□□□ 0.28
NEDD4P46934 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.8■□□□□ 0.28
NEDD4P46934 MIR3677-201ENST00000578964 60 ntBASIC16.8■□□□□ 0.28
NEDD4P46934 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
NEDD4P46934 AC012044.1-201ENST00000603431 297 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms