Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.08■□□□□ 0.17
CIITAP33076 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CIITAP33076 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.08■□□□□ 0.17
CIITAP33076 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
CIITAP33076 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CIITAP33076 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
CIITAP33076 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 AL583805.1-201ENST00000391389 531 ntBASIC16.08■□□□□ 0.16
CIITAP33076 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 RPL8P2-201ENST00000430538 502 ntBASIC16.08■□□□□ 0.16
CIITAP33076 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CIITAP33076 FTH1P22-201ENST00000456305 520 ntBASIC16.08■□□□□ 0.16
CIITAP33076 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.08■□□□□ 0.16
CIITAP33076 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.08■□□□□ 0.16
CIITAP33076 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.08■□□□□ 0.16
CIITAP33076 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.08■□□□□ 0.16
CIITAP33076 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.08■□□□□ 0.16
CIITAP33076 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.08■□□□□ 0.16
CIITAP33076 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.08■□□□□ 0.16
CIITAP33076 AC007718.1-201ENST00000621078 280 ntBASIC16.08■□□□□ 0.16
CIITAP33076 CMC2-224ENST00000630396 481 ntTSL 5 BASIC16.08■□□□□ 0.16
CIITAP33076 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.08■□□□□ 0.16
CIITAP33076 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.08■□□□□ 0.16
CIITAP33076 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.08■□□□□ 0.16
CIITAP33076 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CIITAP33076 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC16.08■□□□□ 0.16
CIITAP33076 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC16.08■□□□□ 0.16
CIITAP33076 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CIITAP33076 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CIITAP33076 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CIITAP33076 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CIITAP33076 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC16.07■□□□□ 0.16
CIITAP33076 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CIITAP33076 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CIITAP33076 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 AL807761.2-201ENST00000422849 729 ntBASIC16.07■□□□□ 0.16
CIITAP33076 PPP1R2P4-201ENST00000424051 595 ntBASIC16.07■□□□□ 0.16
CIITAP33076 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.07■□□□□ 0.16
CIITAP33076 NDUFS6P1-201ENST00000485187 316 ntBASIC16.07■□□□□ 0.16
CIITAP33076 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC16.07■□□□□ 0.16
CIITAP33076 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC16.07■□□□□ 0.16
CIITAP33076 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 AL133467.4-201ENST00000602953 725 ntBASIC16.07■□□□□ 0.16
CIITAP33076 AL021707.6-201ENST00000609212 491 ntBASIC16.07■□□□□ 0.16
CIITAP33076 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.07■□□□□ 0.16
CIITAP33076 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
CIITAP33076 AC015967.2-201ENST00000624092 234 ntBASIC16.07■□□□□ 0.16
CIITAP33076 AC006435.4-201ENST00000625037 234 ntBASIC16.07■□□□□ 0.16
CIITAP33076 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.07■□□□□ 0.16
CIITAP33076 AL356737.1-201ENST00000634391 234 ntBASIC16.07■□□□□ 0.16
CIITAP33076 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.07■□□□□ 0.16
CIITAP33076 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.07■□□□□ 0.16
CIITAP33076 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CIITAP33076 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CIITAP33076 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CIITAP33076 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CIITAP33076 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms