Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC16.35■□□□□ 0.21
SMARCA1P28370 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 AL591122.2-201ENST00000624125 1853 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 AC004554.1-201ENST00000422830 1468 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 AC068760.1-201ENST00000493579 1953 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.35■□□□□ 0.21
SMARCA1P28370 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SMARCA1P28370 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SMARCA1P28370 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.34■□□□□ 0.21
SMARCA1P28370 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.34■□□□□ 0.21
SMARCA1P28370 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 RPL8P2-201ENST00000430538 502 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 AC018638.5-201ENST00000450885 754 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.34■□□□□ 0.21
SMARCA1P28370 AC019193.1-201ENST00000506678 823 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC16.34■□□□□ 0.21
SMARCA1P28370 RHOQP1-201ENST00000555758 579 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 AC103810.10-201ENST00000606504 343 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
SMARCA1P28370 AC015967.2-201ENST00000624092 234 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 AC006435.4-201ENST00000625037 234 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 AL356737.1-201ENST00000634391 234 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 AC126755.1-201ENST00000525846 6405 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SMARCA1P28370 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.34■□□□□ 0.21
SMARCA1P28370 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SMARCA1P28370 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SMARCA1P28370 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMARCA1P28370 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.34■□□□□ 0.21
SMARCA1P28370 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SMARCA1P28370 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
SMARCA1P28370 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
SMARCA1P28370 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SMARCA1P28370 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SMARCA1P28370 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 MST1P2-201ENST00000457982 2291 ntBASIC16.33■□□□□ 0.2
SMARCA1P28370 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.33■□□□□ 0.2
SMARCA1P28370 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.33■□□□□ 0.2
SMARCA1P28370 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC16.33■□□□□ 0.2
SMARCA1P28370 AC098934.1-203ENST00000442868 1262 ntBASIC16.33■□□□□ 0.2
SMARCA1P28370 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
SMARCA1P28370 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.33■□□□□ 0.2
SMARCA1P28370 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.33■□□□□ 0.2
SMARCA1P28370 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC16.33■□□□□ 0.2
SMARCA1P28370 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.33■□□□□ 0.2
SMARCA1P28370 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.33■□□□□ 0.2
SMARCA1P28370 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.33■□□□□ 0.2
SMARCA1P28370 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
SMARCA1P28370 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.33■□□□□ 0.2
SMARCA1P28370 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
SMARCA1P28370 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SMARCA1P28370 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms